Query= MSMg01no261_f06.b1 MSMg01no261_f06.b1 CHROMAT_FILE:
MSMg01no261_f06.b1 PHD_FILE: MSMg01no261_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:41 2005
(293 letters)
>mm_chr5_105881641_105882333
Length = 693
Score = 476 bits (246), Expect = e-139
Identities = 287/316 (90%), Gaps = 24/316 (7%)
Strand = Plus / Plus
Query: 1 ctcttctacgcccaatctccaaggaatacgcaacatggtggcagagcccatacccgacat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 177 ctcttctacgcccaatctccaaggaatacgcaacatggtggcagagcccataaacgacat 236
Query: 61 ggcagcagagccattaaagagcatggtggcagagcccataaacgacatggttgcagaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggcagcagagccattaaagagcatggtggcagagcccataaacgacatggttgcagaccc 296
Query: 121 catatgcagcatggtcacagaatgcatagacagcatggttacagagcctttaaacagcat 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 297 catatgcagcatggtcacagaatgcatagacagcatggttgcagagcctttaaacagcat 356
Query: 181 ggttgcagagcc------------------------tataaacagcttggtgccagagcc 216
|||||||||||| ||||||||||||||||||||||||
Sbjct: 357 ggttgcagagcccataagcagcatggttgcagagcctataaacagcttggtgccagagcc 416
Query: 217 catatgcagcatggtcgaagagtgcataaacagcatgtttgcagagcctttaaacagcat 276
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 417 catatgcagcatggtcgaagagtgcataaacagcatggttgcagagcctttaaacagcat 476
Query: 277 gatgccagagctcata 292
||||||||||| ||||
Sbjct: 477 gatgccagagcccata 492
Score = 145 bits (75), Expect = 3e-39
Identities = 180/229 (78%), Gaps = 26/229 (11%)
Strand = Plus / Plus
Query: 65 gcagagccattaaagagcatggtggcagagcccataaacga-catggttgcagaccccat 123
|||||||| ||||| |||||| || |||||||||||||| | |||||||||||| | |||
Sbjct: 457 gcagagcctttaaacagcatgatgccagagcccataaac-accatggttgcagagcacat 515
Query: 124 atgcagcatggtcacagaatgcatagacagcatggttacagagcctttaaacagcatggt 183
| ||||||| || | ||| || || ||||||||||||||
Sbjct: 516 aagcagcat-------------at--------ttgtt---gaacccttaaacagcatggt 551
Query: 184 tgcagagcctataaacagcttggtgccagagcccatatgcagcatggtcgaagagtgcat 243
|||||||||||||| |||| ||||| ||||||||||| ||||||| || | |||| |||
Sbjct: 552 tgcagagcctataagcagcatggtggcagagcccataagcagcatagttgcagagcccat 611
Query: 244 aaacagcatgtttgcagagcctttaaacagcatgatgccagagctcata 292
|||||||||| |||||||||||||||||||| || ||||||||| ||||
Sbjct: 612 aaacagcatggttgcagagcctttaaacagcttggtgccagagcccata 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no261_f06.g1 MSMg01no261_f06.g1 CHROMAT_FILE:
MSMg01no261_f06.g1 PHD_FILE: MSMg01no261_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:41 2005
(420 letters)
>mm_chr5_106050920_106051739
Length = 820
Score = 789 bits (408), Expect = 0.0
Identities = 417/420 (99%)
Strand = Plus / Minus
Query: 1 atttggatcccaggaaacacagatcaggctcaattcatggaggacctggaaagccaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttggatcccaggaaacacagatcaggctcaattcatggaggacctggaaagccaggaa 561
Query: 61 gctggcttactgagacagacaaggcaagtgtttggatcagagaaggaagagcagtgatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctggcttactgagacagacaaggcaagtgtttggatcagagaaggaagagcagtgatag 501
Query: 121 gtctgtgacccttaatctggaggcggagatgagagcaacagggcaggtagggagtttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtctgtgacccttaatctggaggcggagatgagagcaacagggcaggtagggagtttatg 441
Query: 181 atatttgttttctgctccttaagcttgagatgacaggatacctagaaatgcccagaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atatttgttttctgctccttaagcttgagatgacaggatacctagaaatgcccagaagga 381
Query: 241 caggtgggctaggagggagaaaagaggtgtcagccagaggcagaaacctacaagtcaccc 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 caggtgggctaggagggagaaaagaggtggcagccagaggcagaaacctacaagtcaccc 321
Query: 301 ttggaaggcctgcaagctaacagccatgcaggttagtcagggcactgaggactggcataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttggaaggcctgcaagctaacagccatgcaggttagtcagggcactgaggactggcataa 261
Query: 361 ggacacatgggcactgaagatggagcaggaaaccttagcccttgacctttggaggacagg 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 ggacacatgggcactgaagatggagcaggaaaccttagtgcttgacctttggaggacagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
