Query= MSMg01no261_p14.b1 MSMg01no261_p14.b1 CHROMAT_FILE:
MSMg01no261_p14.b1 PHD_FILE: MSMg01no261_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:29 2005
(670 letters)
>mm_chr5_97502250_97503313
Length = 1064
Score = 1176 bits (608), Expect = 0.0
Identities = 655/686 (95%), Gaps = 26/686 (3%)
Strand = Plus / Minus
Query: 5 ggaattcactccatctgaccttattcattttccccaacactttgtactattacatacaaa 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 ggaattcactccatctgacattattcattttccccaacactttgtactattacatacaaa 915
Query: 65 caaagcacat--------------------gcacgcacgcacgcacgcacataaagtgta 104
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 914 caaagcacatgcacgcacgcacgcacgcacgcacgcacgcacgcacgcacataaagtgta 855
Query: 105 tttattcatccaacaaatagctcagtgtttggtaatacatccagcacagcactgttctga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tttattcatccaacaaatagctcagtgtttggtaatacatccagcacagcactgttctga 795
Query: 165 cccctaccctcacgtagcttatatgaaaaacaagcattaaagtagtagacactacaaaat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cccctaccctcacgtagcttatatgaaaaacaagcattaaagtagtagacactacaaaat 735
Query: 225 gtatacagtgtgtttgaaaacaaatgtggtctgtagtgtagcaaagaggaaaggaaagca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gtatacagtgtgtttgaaaacaaatgtggtctgtagtgtagcaaagaggaaaggaaagca 675
Query: 285 ggaggacagagtgattcctgggacagaacagagagagactgcaagcagctggggatggag 344
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 674 ggaggacagagtgattcctgggacagaacagagagagactgcaggcagctggggatggag 615
Query: 345 acacagggtgagcatgagcatcgcagagcagtcgagaaagaacctccatccccgatcccc 404
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 614 acacagggtgagcatgagcatcgcagagcagtcgagaaagaaccttcatccccgatcccc 555
Query: 405 ggtcatggcagtactcccttactcactagggatgcttacgcgcccgctaagcactttctg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggtcatggcagtactcccttactcactagggatgcttacgcgcccgctaagcactttctg 495
Query: 465 acttgttggtataatgcctcttttctgattttaagcaatcaaaattgtactatttgacac 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gcttgttggtataatgcctcttttctgattttaagcaatcaaaattgtactatttgacac 435
Query: 525 ttatcaagaaagaaattttaggcattcaagtagacctttgttctgtagccattttgaaag 584
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 ttatcaagaaagaaattttaggcattcaagtagacctttgttccgtagccattttgaaag 375
Query: 585 aaaaaaaaaaagagtcaaatccattttcttgctagtttgttttcaagaactgttctggtg 644
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaaaaaaa--gagtcaaatccattttcttgctagtttgttttcaagaactgttctggt- 318
Query: 645 agtaagttaaagaggctagaggttaa 670
|||||||||||||||||||||||
Sbjct: 317 ---aagttaaagaggctagaggttaa 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1064
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1054
Effective search space: 695640
Effective search space used: 695640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_p14.g1 MSMg01no261_p14.g1 CHROMAT_FILE:
MSMg01no261_p14.g1 PHD_FILE: MSMg01no261_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:29 2005
(633 letters)
>mm_chr5_97351021_97352053
Length = 1033
Score = 1178 bits (609), Expect = 0.0
Identities = 627/633 (99%)
Strand = Plus / Plus
Query: 1 ccacctggctagaagccagaataaacacgagcattgtcctgcagtcctctgctttgctga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccacctggctagaagccagaataaacacgagcattgtcctgcagtcctcttctttgctga 260
Query: 61 acagatagataacaacgtcaggtttagggtgggtttctttacaactgcctttgactttaa 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagataaataacaacgtcaggtttagggtgggtttctttacaactgcctttgactttaa 320
Query: 121 ttcataccttttcctcaaagaatacagtgcagtccgtctttcacatgtttatgatctgaa 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttcataccttttcctcaaagaatacagtgcagtccgtcttttacatgtttatgatctgaa 380
Query: 181 tcagacagataaaagatcaatcgccatgtagctccatcctgagagcttcctttcaagggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagacagataaaagatcaatcgccatgtagctccatcctgagagcttcctttcaagggg 440
Query: 241 caggaagtagtgttctcttaaaagcagcccccctttactccttagtttaaaaccctagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggaagtagtgttctcttaaaagcagcccccctttactccttagtttaaaaccctagga 500
Query: 301 aaatatctgtggcagacctatgttattttcatctacccagcatccttcctttggaaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatatctgtggcagacctatgttattttcatctacccagcatccttcctttggaaaaac 560
Query: 361 cacgacttccctttctgccagtcaccatgtccctcctctacgccatccatcctgggccat 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 cacgacttccctttctgccagtcactatgtccctcctctacgccatccatcctgggccat 620
Query: 421 ggacataggtgtggccaagcctaaaattcttcattatattaaaacagtggtgtggagaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggacataggtgtggccaagcctaaaattcttcattatattaaaacagtggtgtggagaca 680
Query: 481 gactttctttctctgaggacactaaagaagggcacatctcagagaacagctgctatttcc 540
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 681 gactttctttctctgaggacactgaagaagggcacatctcagcgaacagctgctatttcc 740
Query: 541 acatgtggaggacagacagaagagactcaacaacaggagaaagcattagaaaggggaggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acatgtggaggacagacagaagagactcaacaacaggagaaagcattagaaaggggaggc 800
Query: 601 ctaaagatggagaggaggaagtgaggagttgga 633
|||||||||||||||||||||||||||||||||
Sbjct: 801 ctaaagatggagaggaggaagtgaggagttgga 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
