Query= MSMg01no261_p20.b1 MSMg01no261_p20.b1 CHROMAT_FILE:
MSMg01no261_p20.b1 PHD_FILE: MSMg01no261_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:30 2005
(529 letters)
>mm_chr5_136407371_136408295
Length = 925
Score = 926 bits (479), Expect = 0.0
Identities = 516/535 (96%), Gaps = 16/535 (2%)
Strand = Plus / Plus
Query: 1 cggaattctgcccaatcttgtac-atct--atcctcttcacctacacacaaggctgtgcg 57
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 201 cggaattctgcccaatc----acgatctctatcctcttcacctacacacaaggctgtgcg 256
Query: 58 cagattccagccacagcattcccagaataattcccctagatacaactaaacctagttccc 117
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cggattccagccacagcattcccagaataattcccctagatacaactaaacctagttccc 316
Query: 118 tctatcactccaggttcagcttacaggagagctcaactggggtggtgaaatgaagtctcc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctatcactccaggttcagcttacaggagagctcaactggggtggtgaaatgaagtctcc 376
Query: 178 ttcctcatgccaagttgtcgaatgagggcggttccatttttttctggtgctgtgacctga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttcctcatgccaagttgtcgaatgagggcggttccatttttttctggtgctgtgacctga 436
Query: 238 actcaggactcgcacacaggcagttggatgagctgccaagtttaggaaccaaccgtgttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 actcaggactcgcacacaggcagttggatgagctgccaagtttaggaaccaaccgtgttt 496
Query: 298 cagttaagtcttgtgtgaaatttcatggtgagatgatttcctcaaaaccacagaaaatag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 497 cagttaagtcttgtgtgaaatttcatggtgagatgatttcctcaaaaccacagaaaagag 556
Query: 358 gtttaaggaaacttttttttttttaa---tctttattttacaaatggttcttccttccaa 414
|||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 557 gtttaaggaaactttttttt----aaaaatctttattttacaaatggttcttccttccaa 612
Query: 415 agtactgccaataaaacacagtcttcccctctggaaaatactgtatggggttcttattct 474
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agtactgccaataaaaca--gtcttcccctctggaaaatactgtatggggttcttattcc 670
Query: 475 ctaacagctactgcagatggccagcaggaagccagcatactttaaggtttttatg 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ctaacagctactgcagatggccagcaggaagccagcatactttaaggtttttatg 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 925
Length adjustment: 10
Effective length of query: 519
Effective length of database: 915
Effective search space: 474885
Effective search space used: 474885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_p20.g1 MSMg01no261_p20.g1 CHROMAT_FILE:
MSMg01no261_p20.g1 PHD_FILE: MSMg01no261_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:30 2005
(513 letters)
>mm_chr5_136568587_136569499
Length = 913
Score = 946 bits (489), Expect = 0.0
Identities = 507/513 (98%)
Strand = Plus / Minus
Query: 1 agagtccagaggtggtggcgcatgcctttagtcccaacactttgggaggcagaggcagac 60
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 839 agagtccagaggtggtggcgcatgcctttagtcccaacacttcgggaggtagaggcagac 780
Query: 61 ggatctaggagtttgagcccgacagccagggcaatttcacggagaaactgtctcaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 779 ggatctaggagtttgagcccgacagccagggcaatttcacggagaaactatctcaacaaa 720
Query: 121 ataaaacaagaaaattcagatcaaaagaaaagatcaccctgttcctgaagactaagcctt 180
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 719 ataaaacaagaaaattcaggtcaaaagaaaagatcaccctgttcctgaagactaagccct 660
Query: 181 gtcagagtcggggctcgggcatctgggcagtcaggtcatctcttgagaggaggaagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtcagagtcggggctcgggcatctgggcagtcaggtcatctcttgagaggaggaagagga 600
Query: 241 agaagagacgaccaggcctcccccacacccctcccccagccgtctcacctcgcctcaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agaagagacgaccaggcctcccccacacccctcccccagccgtctcacctcgcctcaagc 540
Query: 301 accgcgcagcgcagccggctggcatggacccctggcaccacctccaggcgcaggtggatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 accgcgcagcgcagccggctggcatggacccctggcaccacctccaggcgcaggtggatc 480
Query: 361 tcaccctgcacctcctcgttcgggtccacctccaccaggtgggtccatccactgaatcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcaccctgcacctcctcgttcgggtccacctccaccaggtgggtccatccactgaatcct 420
Query: 421 gcagggctttatgtcagtcaaggatgggccccgcccctccacacccgacgacctaccata 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcaggactttatgtcagtcaaggatgggccccgcccctccacacccgacgacctaccata 360
Query: 481 gcttccccatcactcccttggagtcttctggat 513
|||||||||||||||||||||||||||||||||
Sbjct: 359 gcttccccatcactcccttggagtcttctggat 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
