Query= MSMg01no262_b18.b1 MSMg01no262_b18.b1 CHROMAT_FILE:
MSMg01no262_b18.b1 PHD_FILE: MSMg01no262_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:40 2005
(305 letters)
>mm_chr5_72533936_72534639
Length = 704
Score = 516 bits (267), Expect = e-151
Identities = 294/303 (97%), Gaps = 1/303 (0%)
Strand = Plus / Minus
Query: 1 acagcgcataatggtttctgcaattgctaactttgtagaatctgctagaaggctcgagat 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct: 502 acagcgcataatggtttttgcaattgctaactttgtagaatctgctagaagg-ttgagat 444
Query: 61 ggggggagtaaacaaggtaaaatatatgaagtgtaagtctagcatgatgtacagaaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggggggagtaaacaaggtaaaatatatgaagtgtaagtctagcatgatgtacagaaatga 384
Query: 121 tgaactaggtccaattcctaaatgattatctataaccactgttgtacaacttgagtgata 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaataggtccaattcctaaatgattatctataaccactgttgtacaacttgagtgata 324
Query: 181 agagattctgggaagaataataggaaaaatttaaatgccatatagttaagactaggggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agagattctgggaagaataataggaaaaatttaaatgccatatagttaagactaggggag 264
Query: 241 cctatgcatagaattatttaaatttatcatgctaccatgatgtcttgaaactttatgttc 300
||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 cctatgcatagaaaaacataaatttatcatgctaccatgatgtcttgaaactttaagttc 204
Query: 301 tgg 303
|||
Sbjct: 203 tgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 704
Length adjustment: 9
Effective length of query: 296
Effective length of database: 695
Effective search space: 205720
Effective search space used: 205720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_b18.g1 MSMg01no262_b18.g1 CHROMAT_FILE:
MSMg01no262_b18.g1 PHD_FILE: MSMg01no262_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:40 2005
(553 letters)
>mm_chr5_72366009_72366962
Length = 954
Score = 992 bits (513), Expect = 0.0
Identities = 544/557 (97%), Gaps = 7/557 (1%)
Strand = Plus / Plus
Query: 3 tggactc----catccatactcactttcaaagctatggtgtctcaagcaccatgtcactg 58
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tggactccattcatccatactcactttcaaagctatggtgtctcaagcaccatgtcactg 258
Query: 59 acagctatacccatggcagggaatttgagaacccttttctttggtcacagctgacatgca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acagctatacccatggcagggaatttgagaacccttttctttggtcacagctgacatgca 318
Query: 119 aatggccatttttttttcagctaaaggaaaattctattagccatggaagaacgttattcc 178
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatggcca-ttttttttcatctaaaggaaaattctattagccatggaagaacgttattcc 377
Query: 179 cctaaattgtttgttttcaactagtttctgtccaaataaagacaagagagccctaggcct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctaaattgtttgttttcaactagtttctgtccaaataaagacaagagagccctaggcct 437
Query: 239 gccaagatggacagtacaagataagagaaatatctctctatatttgaatcaactattatg 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 438 gccaagatggacagtacaagataagagaaatatctctatatatttgaatcaactattatg 497
Query: 299 agacagtcaccaacaagtaaatagttcaaaatggtctgtgtctttgtaacttaccccacc 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agacagtcaccaagaagtaaatagttcaaaatggtctgtgtctttgtaacttaccccacc 557
Query: 359 tcagttgacctgcaaacgtggggcttaagtagctactgcatttcaggggaagataaaagg 418
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 558 tcagttgacctgcaaacgtggggcttaagtagccactgcatttcaggggcagataaaagg 617
Query: 419 tcaaaggttaaattgaaataggtaatttctagcagtgtctaagaccatgagtactggaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcaaaggttaaattgaaataggtaatttctagcagtgtctaagaccatgagtactggaat 677
Query: 479 t--aaaaaaaatcgtgcttcctatgttgccatctctatatcaccatcacatatgcttgag 536
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 678 ttaaaaaaaaatcgtgcttcctatgttgccatctctaaatcaccatcacatatgcttgag 737
Query: 537 acactcagcttatacag 553
|||||||||||||||||
Sbjct: 738 acactcagcttatacag 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
