BAC Information

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BAC

Clone NameMSMg01-262D08
Chromosome5 (Build37)
Map Location 22,366,169 - 22,366,371
singlet/doubletsinglet
Overlap geneLhfpl3
Upstream geneSlc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174
Downstream geneEG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262D08.T7 (MSMg01no262_d08.b1)MSMg01-262D08.TJ (MSMg01no262_d08.g1)
ACCAG404377AG404378
length737811
length of high quality
(start - end)
250 (74 - 323)203 (73 - 275)
definitionCHROMAT_FILE: MSMg01no262_d08.b1 PHD_FILE: MSMg01no262_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:48 2005CHROMAT_FILE: MSMg01no262_d08.g1 PHD_FILE: MSMg01no262_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGG
AATTCAAAGCCCATTTCCCAACATAATAAAAGTAATATAGAGCAAACTAG
TAGCCAACATCAAACTAAATGGAGAGAAACTTGAATCAATTCCACTAAAA
TCAGGGACCAGACAAGGCTGCCCACTTTCCCCCTACCTATTCAATATAGT
ACCTGAAGTCCTAGCCAGAGCATTCGACAACAAAAGGAGATCAAGCGGAT
ACAAATTGGAAAGGAATAAGTCAAAATATCACTATTTGCAGATGATATGA
TAGTATATCTAAGTGACCCTAATTTTTCCACCAGAGAACTCCTAATCCTG
ATAAACAGCTTCAGTGTAGTAGCTGGATATAAAATTAACTCAAACAAATC
AGTGGTCTTTCTGTACACAAAGATAAAGAGGCTGAGAGTGAATTTAGGGA
AACAACACCCTTCACAATAGTTACAAATAATTATAAAATACCTTGGCGTG
ACTCTAACTAAGGAAGTTATCTGTTTGATAGAAACTTCAAGTCTCTTGTA
TGCCCCAGTACAGGGGCATGCCAGGACAAAGAAGTGGGAGTGTTCGGGCA
GTGAAGTTATTTTGAATTATTTTAACCAATTTATTCTTTTATTATTTTCA
CCCCCCCCTTCTTCTTGCATAATTACTCATATTATTATTCTTTTTTTTAA
TTACTTATAATAATCACAAACCACTCTTATTTATTTA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCGAATTCCATGGAATTCTATCTTTGAGTTAGAAGTC
AACTTCTGAACACCTGCATCTGGCAAGATATATAGCAAATGCCCTCAATT
GTAATACCATCCTGAAGGAGATTAGCCCTTCTAAAAGATGTGGGGAAATA
CCATCTTAGCTTTAATCCAAAGAGCACCTTTGTGAGACAATTCCATTCGT
ACTGTGTACACACCTGATTGCAGATAGAGCTTTCAGACTAAGAGCATCAT
TTTCAATGGGTCTTATAATTTTGTCAGTAACTTATTTCACATTTAAATGA
CCAATCCAATATATTGTCATGAACTAACCATAAAATATTTCCATTCAATT
TTTTAAAAGAATATCGAGTATTTTTGTTTTCCCCTCAAAGTCTATTCAGC
TTTAAATAATTTGGGGTGCTGCTTTCCATTCCATATCTCCAGGGCTCTGA
AAGGCATTGTTCCTACATTCTACCTTTTTCATTTACTATCTGCCTACATC
CATACTGCTATTTTTCCCTTTGTATTTTTTAATCGCATTTTGTCTAGTTT
TTCTTTATATATTCATGTAATTCATGCGTTTTCCCATAAAAGAATCTTGC
CATTAACAATCTACTATTATACTCCTCATAACGGTCCATTAACGAAAGGG
TATGCCTTCTCCCTTTTGTACCTTTGATCACCAAATTACCATCATCTTTA
CCTCTTATTAGTGTGTCCTCGCTGCTCCTCTCTCCCCCTTTTCTTTTCTC
TGCACATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_d08.g1 MSMg01no262_d08.g1 CHROMAT_FILE:
MSMg01no262_d08.g1 PHD_FILE: MSMg01no262_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:48 2005
         (203 letters)



>mm_chr5_22365969_22366571
          Length = 603

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaattctatctttgagttagaagtcaacttctgaacacctgcatctggcaagatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 403 atggaattctatctttgagttagaagtcaacttctgaacacctgcatctgggaagatata 344

                                                                       
Query: 61  tagcaaatgccctcaattgtaataccatcctgaaggagattagcccttctaaaagatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tagcaaatgccctcaattgtaataccatcctgaaggagattagcccttctaaaagatgtg 284

                                                                       
Query: 121 gggaaataccatcttagctttaatccaaagagcacctttgtgagacaattccattcgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gggaaataccatcttagctttaatccaaagagcacctttgtgagacaattccattcgtac 224

                                  
Query: 181 tgtgtacacacctgattgcagat 203
           |||||||||||||||||||||||
Sbjct: 223 tgtgtacacacctgattgcagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)