BAC Information

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BAC

Clone NameMSMg01-262G10
Chromosome5 (Build37)
Map Location 26,812,712 - 26,944,449
singlet/doubletdoublet
Overlap gene4930584F24Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262G10.T7 (MSMg01no262_g10.b1)MSMg01-262G10.TJ (MSMg01no262_g10.g1)
ACCAG404510AG404511
length734740
length of high quality
(start - end)		687 (41 - 727)650 (71 - 720)
definitionCHROMAT_FILE: MSMg01no262_g10.b1 PHD_FILE: MSMg01no262_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:03 2005CHROMAT_FILE: MSMg01no262_g10.g1 PHD_FILE: MSMg01no262_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,812,712 - 26,813,394)(26,943,880 - 26,944,449)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCAGGTTCAGTTCTAGCCTAAGCCCTTATCTCTCTTAGCTTTGGGCCCA
GGCCCTTAGGTTTAAGGATAGACCCAGGAGGATATATCTTCTAGCTTTGG
GCCAAAGCCTATTCAGGTTAACTGTTTGGCCCAGACCTACATCTCTTCTT
CCTTTGTACTGAGGATTCCTCCATGTCAGGGTTGTGCCCAGATGCACATC
TCTCCTAGCTTTAGGTTAAGGCCTGTTCAAGGTTAGTGTTTTGCCTAGGG
CTATATCATCTAAAGATCTTTAGAGTTAGTGTTAGGCCTAGACCCACATC
TCTTCTAGCTTTGGGCTGAAACCGACTCTGGGTTAGAGTTTGGCCCAGAC
AGACATCTCTTCTTCCTTTTTATCCATTCCTATTCAGGTTTAAGATTTGG
CCCAGGCCCACAACTCTCCTAGCATTGGGTGGAGGATTCTTCAGGGTTAA
TGTTAGGCCCAGGCCAATCTCTTCTTGATTTGGGCCCAAATTTCTTTCTT
CAGAATTAGGTTTTAGCTTAGGCCCATATCTCTCTTAGCTTAGGGACCAG
TCTTATTTAGATTTAGGATAGAACCAGGCCCACATCTCTTCTTACTTTGG
ACCTAGGCTTCTTCAATTATAAGATAAAGCCCAGGGCCATATCTCTTCTC
TCTTTGTGGTGAGAATTCTTTATGGTTAGGTTTA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGACTACCCTGGTGTCAACAATCACCTGCT
CCAAAATTCATATTTAAAAGATGAGGCAGTTGAGATGTTGAGAGGTTAAA
TGATTAACCCAACGTCACACAGTAGCCATCTAGGCCTCCATAAGAGACTC
CCCACAATGCATCTCATCAGGCCTTGGGATAAAAACCTCTGTATTTATCC
TGGTGACCCAGGGCAGGTTATGTGCATTATTATTGTTGCTACTATATCTG
CACAGGGAAGAACACTAACACCAGATATAAAACGGAGAGACAGAGAGTGA
TAGAGACACACACACAGAGTTACACACAGAGCAACAGAGACAGACACACA
GAGAGAGGTTAAAAAGGGCAGGGGCCTGCTAACACCTGGGCACTTAGTCA
TTACACACAAACTGTTCACATTTGCCCTGAGGACAGGGGCCCCCTATGGG
GTTTTAGCTGATGCTGTCATTCCCTGTCATTCTTCCCCTCCTCATGCCAA
CTCAAGCCTAGAAAGGAGGCTGAGAAGTTTGCCATCTATCACCTATGCCA
CTATATGTCAATCGCTTTACATAGCAAAGGTTTACCTCTGCCAGTTGAGC
AGACTTGGATATGAATTAGAAGCTTCCTGAAGCAGTTCATTTCCCTGGTA
ATATTTCTTCACACCAAGCAGAGGATTTCAGAATGGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_g10.b1 MSMg01no262_g10.b1 CHROMAT_FILE:
MSMg01no262_g10.b1 PHD_FILE: MSMg01no262_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:03 2005
         (687 letters)



>mm_chr5_26812508_26813594
          Length = 1087

 Score = 1305 bits (675), Expect = 0.0
 Identities = 681/683 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaggttcagttctagcctaagcccttatctctcttagctttgggcccaggcc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaggtttagttctagcctaagcccttatctctcttagctttgggcccaggcc 264

                                                                       
Query: 65  cttaggtttaaggatagacccaggaggatatatcttctagctttgggccaaagcctattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttaggtttaaggatagacccaggaggatatatcttctagctttgggccaaagcctattc 324

                                                                       
Query: 125 aggttaactgtttggcccagacctacatctcttcttcctttgtactgaggattcctccat 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggttaactgtttggcccagacccacatctcttcttcctttgtactgaggattcctccat 384

                                                                       
Query: 185 gtcagggttgtgcccagatgcacatctctcctagctttaggttaaggcctgttcaaggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcagggttgtgcccagatgcacatctctcctagctttaggttaaggcctgttcaaggtt 444

                                                                       
Query: 245 agtgttttgcctagggctatatcatctaaagatctttagagttagtgttaggcctagacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgttttgcctagggctatatcatctaaagatctttagagttagtgttaggcctagacc 504

                                                                       
Query: 305 cacatctcttctagctttgggctgaaaccgactctgggttagagtttggcccagacagac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacatctcttctagctttgggctgaaaccgactctgggttagagtttggcccagacagac 564

                                                                       
Query: 365 atctcttcttcctttttatccattcctattcaggtttaagatttggcccaggcccacaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctcttcttcctttttatccattcctattcaggtttaagatttggcccaggcccacaac 624

                                                                       
Query: 425 tctcctagcattgggtggaggattcttcagggttaatgttaggcccaggccaatctcttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctcctagcattgggtggaggattcttcagggttaatgttaggcccaggccaatctcttc 684

                                                                       
Query: 485 ttgatttgggcccaaatttctttcttcagaattaggttttagcttaggcccatatctctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgatttgggcccaaatttctttcttcagaattaggttttagcttaggcccatatctctc 744

                                                                       
Query: 545 ttagcttagggaccagtcttatttagatttaggatagaaccaggcccacatctcttctta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttagcttagggaccagtcttatttagatttaggatagaaccaggcccacatctcttctta 804

                                                                       
Query: 605 ctttggacctaggcttcttcaattataagataaagcccagggccatatctcttctctctt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctttggacctaggcttcttcaattataagataaagcccagggccatatctcttctctctt 864

                                  
Query: 665 tgtggtgagaattctttatggtt 687
           |||||||||||||||||||||||
Sbjct: 865 tgtggtgagaattctttatggtt 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_g10.g1 MSMg01no262_g10.g1 CHROMAT_FILE:
MSMg01no262_g10.g1 PHD_FILE: MSMg01no262_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:03 2005
         (650 letters)



>mm_chr5_26943880_26944929
          Length = 1050

 Score = 1087 bits (562), Expect = 0.0
 Identities = 568/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agactaccctggtgtcaacaatcacctgctccaaaattcatatttaaaagatgaggcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agactaccctggtgtcaacaatcacctgctccaaaattcatatttaaaagatgaggcagt 511

                                                                       
Query: 61  tgagatgttgagaggttaaatgattaacccaacgtcacacagtagccatctaggcctcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 510 tgagatgttgagaggttaaatgattaacccaacgtcacacagtagccatctaggtctcca 451

                                                                       
Query: 121 taagagactccccacaatgcatctcatcaggccttgggataaaaacctctgtatttatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taagagactccccacaatgcatctcatcaggccttgggataaaaacctctgtatttatcc 391

                                                                       
Query: 181 tggtgacccagggcaggttatgtgcattattattgttgctactatatctgcacagggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tggtgacccagggcaggttatgtgcattattattgttgctactatatctgcacagggaag 331

                                                                       
Query: 241 aacactaacaccagatataaaacggagagacagagagtgatagagacacacacacagagt 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 330 aacactaacaccagatataaaatggagagacagagagtgatagagacacacacacagagt 271

                                                                       
Query: 301 tacacacagagcaacagagacagacacacagagagaggttaaaaagggcaggggcctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tacacacagagcaacagagacagacacacagagagaggttaaaaagggcaggggcctgct 211

                                                                       
Query: 361 aacacctgggcacttagtcattacacacaaactgttcacatttgccctgaggacaggggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aacacctgggcacttagtcattacacacaaactgttcacatttgccctgaggacaggggc 151

                                                                       
Query: 421 cccctatggggttttagctgatgctgtcattccctgtcattcttcccctcctcatgccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cccctatggggttttagctgatgctgtcattccctgtcattcttcccctcctcatgccaa 91

                                                                       
Query: 481 ctcaagcctagaaaggaggctgagaagtttgccatctatcacctatgccactatatgtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ctcaagcctagaaaggaggctgagaagtttgccatctatcacctatgccactatatgtca 31

                                         
Query: 541 atcgctttacatagcaaaggtttacctctg 570
           ||||||||||||||||||||||||||||||
Sbjct: 30  atcgctttacatagcaaaggtttacctctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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