ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCCTCTCTATATTCCGTTTTTTTAGTAAAAAATATACAATTTTCTTT
TTTCAGCTTTAATCTGTACAAGTCCTTATAATTAGAATTGACAGGGTGCC
AAAATCCTATCTCCACAAAACCCACATCTGAATAATCCAACATGTTTACA
TTAAAAAATGCTGGCTTGAAGCTGGTTCAGGCAAGAGATAACATACTCAC
AAGTACTCTCTCAATTTGTTTTATAATGCTATAGGAACCTCTCCTTCTAT
CTGCTATAGCACTTATAAGAGATCTATGCAGGCAAAGGTCTTGTATGTCT
TCTTAACTGATAGATTCTCAGAACCTAGTATTTTGCCTAGTTTGATGCTC
AGTGAAGGCTAGTTCTGTGATTGGTCAGATTCAACTCTTTCTAGCCCTTT
GTCCTAATGGTTCCTCAATGGGTAGAACAGACACTAAGAATGATGAACTA
ATGTAGCCTGAGCTCTTTCTGTCACTCACTACTCTTTCTAACTGACTAAA
CACTTCTATGAGCCCTGCATGCATACCTTTTGCTAGGCACAATCAAGGCA
GACAAGATACATGTGGGAAAACTGAAAGCTACCTGTACCTCAAGGCAGAG
CTTTATAGAAATGAAAACAAACAATAAATTTGCAGTGGGCTGGTTGCTGA
AAGGCTGGGGGA

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACAGAGTGAGTT
CTAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAAAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGA
AAGAGAGAAAGAAAAAGAATAGTAAGTGAGAGAGAGAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAAAGAAAAGTAAGTGAGA
GAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGGAAGAAAGAAAGGAAGGAATAGGTCCATACAGGTATA
GGATTAAAGATGGTATAGTGATTACGACATAGATATACAGATAAGCTATA
TATAAAAATAGACAAATATTTCTAAAATATACATAGAACATAGTATATGA
ATACACAAACATACATACACACACACACACACACACACACACATATATAT
ATATACATA

Query= MSMg01no262_g11.b1 MSMg01no262_g11.b1 CHROMAT_FILE:
MSMg01no262_g11.b1 PHD_FILE: MSMg01no262_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:03 2005
         (559 letters)



>mm_chr5_51755653_51756612
          Length = 960

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/478 (98%), Gaps = 5/478 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctctctatattccg---tttttttagtaaaaaatatacaattttcttttttcag 62
           |||||||||||||||||  |   |||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattcctctctatatt--gtgttttttttagtaaaaaatatacaattttcttttttcag 419

                                                                       
Query: 63  ctttaatctgtacaagtccttataattagaattgacagggtgccaaaatcctatctccac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctttaatctgtacaagtccttataattagaattgacagggtgccaaaatcctatctccac 359

                                                                       
Query: 123 aaaacccacatctgaataatccaacatgtttacattaaaaaatgctggcttgaagctggt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaaacccacatctgaataatccaacatgtttacattaaaaaatgctggcttgaagctggt 299

                                                                       
Query: 183 tcaggcaagagataacatactcacaagtactctctcaatttgttttataatgctatagga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcaggcaagagataacatactcacaagtactctctcaatttgttttataatgctatagga 239

                                                                       
Query: 243 acctctccttctatctgctatagcacttataagagatctatgcaggcaaaggtcttgtat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acctctccttctatctgctatagcacttataagagatctatgcaggcaaaggtcttgtat 179

                                                                       
Query: 303 gtcttcttaactgatagattctcagaacctagtattttgcctagtttgatgctcagtgaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gtcttcttaactgatagattctcagaacctagtattttgcctagtttgatgctcagtgaa 119

                                                                       
Query: 363 ggctagttctgtgattggtcagattcaactctttctagccctttgtcctaatggttcctc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ggctagttctgtgattggtcagattcaactctttctagccctttgtcctaatggttcctc 59

                                                                     
Query: 423 aatgggtagaacagacactaagaatgatgaactaatgtagcctgagctctttctgtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  aatgggtagaacagacactaagaatgatgaactaatgtagcctgagctctttctgtca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space:   521550
Effective search space used:   521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)