Query= MSMg01no262_l20.b1 MSMg01no262_l20.b1 CHROMAT_FILE:
MSMg01no262_l20.b1 PHD_FILE: MSMg01no262_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:27 2005
(293 letters)
>mm_chr5_84936142_84936835
Length = 694
Score = 485 bits (251), Expect = e-141
Identities = 281/291 (96%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 1 tcaagcagtatctcatgtttgtgcctttaaacactgaccagcaagatctacttctatttc 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 491 tcaagcagtatctcatgtttgtgcctttaaaccctgaccagcaagatctaattctatttc 432
Query: 61 catttacagatactatttcccagagaacaaaagcttgattaaaataatgtgatccaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 catttacagatactatttcccagagaacaaaagcttgattaaaataatgtgatccaattg 372
Query: 121 aaatagaaattatgttattattaattattagatgcattgtaaccttttgctcagtgattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaatagaaattatgttattattaattattagatgcattgtaaccttttgctcagtgattg 312
Query: 181 gaatctcttt-atttgtgcacaaagcactactctgtaccaggttacctcacattttatgc 239
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggatctcttttatttgtgcacaaagcactactctgtaccaggttacctcacattttatgc 252
Query: 240 aagcaattgtttcttagtagcgaaaatgactctttctttcactattactta 290
||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 251 aagcaattggaccaaagtagtgaaaatgactctttctttcactattactta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space: 194540
Effective search space used: 194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no262_l20.g1 MSMg01no262_l20.g1 CHROMAT_FILE:
MSMg01no262_l20.g1 PHD_FILE: MSMg01no262_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:27 2005
(531 letters)
>mm_chr5_84786345_84787275
Length = 931
Score = 996 bits (515), Expect = 0.0
Identities = 528/533 (99%), Gaps = 3/533 (0%)
Strand = Plus / Plus
Query: 1 ttcttttgcatataaaacttaatcaccacttgtaaaaggcatcactttggtacacatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttttgcatataaaacttaatcaccacttgtaaaaggcatcactttggtacacatacc 260
Query: 61 attgttcaagatggtacacatcacttgctttacaaacttacttaagactacattggcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgttcaagatggtacacatcacttgctttacaaacttacttaagactacattggcaca 320
Query: 121 catgaatggcaaaataagaagtttaaattacagttggggaagaggagattttttttgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 catgaatggcaaaataagaagtttaaattacagttggggaagaggag-ttttttttgtaa 379
Query: 181 tcaaaataaaattaattacatattttaatatagtacttattattttaagtttaatcttat 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 tcaaaataaaattaattacatattttaatacagtacttattattttaagtttaatcttat 439
Query: 241 attctgcatgctatcttaatacatttgaagttagataattttaagtgtacaaaggccgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attctgcatgctatcttaatacatttgaagttagataattttaagtgtacaaaggccgag 499
Query: 301 gaataatgacagataaacttgaaaactcaaagaataatatgaatgcttaaaactcggttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaataatgacagataaacttgaaaactcaaagaataatatgaatgcttaaaactcggttc 559
Query: 361 cttagcaggttaaaaaaaaaa--cttatcacttaaataaataaaatggtcatatcagatt 418
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttagcaggttaaaaaaaaaaaacttatcacttaaataaataaaatggtcatatcagatt 619
Query: 419 tcaatttttctcacttacatataagtgttcttattaagcacagatattatgacatttaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaatttttctcacttacatataagtgttcttattaagcacagatattatgacatttaat 679
Query: 479 acttaactagtgtttttaatgtcatttatcatagaatatttgaaaatttagat 531
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 acttaactagtgtttttaatgtcacttatcatagaatatttgaaaatttagat 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
