BAC Information

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BAC

Clone NameMSMg01-262P10
Chromosome5 (Build37)
Map Location 61,612,469 - 61,612,597
singlet/doubletsinglet
Overlap geneLOC666597
Upstream geneCbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262P10.T7 (MSMg01no262_p10.b1)MSMg01-262P10.TJ (MSMg01no262_p10.g1)
ACCAG404918AG404919
length832858
length of high quality
(start - end)
224 (75 - 298)138 (73 - 210)
definitionCHROMAT_FILE: MSMg01no262_p10.b1 PHD_FILE: MSMg01no262_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:45 2005CHROMAT_FILE: MSMg01no262_p10.g1 PHD_FILE: MSMg01no262_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTGTATTATCTTTGAGGTCACTTACATGCATTATCATATCATG
TGCAAATAGTGATAATTTGACTTCTTCCTTTCTACTTTTTAATCCATGTT
ATGGCATTTAGTTGTCTTATTATTCAGCTATAACTTCAATTACTATTTTG
AATAGATATGGAGAGAGGGGGGAGTCTTGTCTTCTCCCGATTTAGTTGAA
TTCTTTTGAGCTCCTTTCTTCTTAATTTGCTGCTTGGCATTGTCTTGTTA
TCAACCGTATTAATGCTTATTTATGTCTCTTGTATTCCAGATGTCTCCAA
GATTTTTATCAATAAAATCTTTTCCACCATCTAATAAGATATTTATAAAT
CTGCTTTTTTCAGTATGGCCCCGCCCCCAGATTTATTTTTGTAGATTTCT
CCATAATTTTGCACCATTTTCCTGCACACCTTGAACATTTTTTTTTTTTT
AGATCATTTTTATATCGACCTTCATTTAATCGCATTTTTTTCGATCTTAT
TTTACCCCCCCTATTCCTTCTTTATTCCACCATTTTGTTAAATAATAATC
AAAAAAAATTTATAATTAATATCCTGTATACTACCTATCCCCAATACAGA
TTTTTATTTATTTAACTTTTTTTTTTAACCTACAATCCTTCTTTTCAATG
ATTTTTTCTTTATTCACCTAATCCCCTTTCCGGTTTATCTTATTACCTAT
CTGTTTTGCTTTTCTCATTATTATTTATTTGATGTAGATGTTATATTATT
GGCACCCCTCCACTCCCTTTGTTTTTTGTTTG
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATATATGGTTTTAAGATGAGTTGAT
GAGAAACTACCTTCTCTGAGCAATCTGTGTAGGAGGGAGGTTCATAGAAT
ACATATCCAAGAATGTGGTGGGAACATCCACATAGAGATGGAGTGGGTGG
GGAGGAGGTGCTCCCTCTACTCTTTTCTTTTTTCTCTTCTCTTTCCCTCT
TCTCTTTTCCGTTATCCTCTCTCTTACCCCTTTACACCTTTTCTTTCCCT
CGCTTCATCTCCTTTTTCTTTTTTTTTTTTATTTTTCTCTTCTTTTCAAT
TTTTCTAAAACATACACTACTTTTTTATTTCTGCTACCTCCCTTTTATTC
TTTATCCTATTTTTTTTATTTACTTTATCCTCTTCGTCTTTCCCCCCCCT
TTATCCTACTTCGTCCTCTCCTCTTCTTCCTCTTACGCCTTATTCTCAAT
TTTATTTCCCCTTTTATCTTCCTTCTTTCTTTTCTTTTTATTTTTTTCTT
TTCCTTCCTTTTTTTCTTATTACTAATCATCACTTCTTTTCTTAACTTTT
ATTCCCAACTTCTATTTTTTATTCTTCCCTATTTACCTTTTTTTATACAT
CTTCAACTCCATTTCTGCTCATCATTTAATACCATCTTTTTACCCTTATC
TTATTTTTTTCTCTTTATTTTTCCTCCCATCACTTATGTCATACTCCTTC
GTTCTGGATTGGATTTTCTCTATTTACCCCGCATCCTTACCTACTCTTTT
CTTCTCTTCATTCTTCCTTCCTCTTCTTTCCTACTTCTTTCTTCTCTCTG
CTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_p10.g1 MSMg01no262_p10.g1 CHROMAT_FILE:
MSMg01no262_p10.g1 PHD_FILE: MSMg01no262_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:45 2005
         (138 letters)



>mm_chr5_61612266_61612797
          Length = 532

 Score =  201 bits (104), Expect = 1e-56
 Identities = 126/136 (92%), Gaps = 8/136 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   atatatggttttaagatgagttgatgagaaactaccttctctgagcaatctgtgtaggag 63
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 atatatggttttaagatgagttgatgagaaactaccttctttgagcaatctgtgtaggag 263

                                                                       
Query: 64  ggaggttcatagaatacatatccaagaatgtggtg-ggaacatccacatagagatggagt 122
           |||||||||||||| ||| ||     ||||||||| ||| ||||||||||||||||||||
Sbjct: 264 ggaggttcatagaacaca-at-----aatgtggtgagga-catccacatagagatggagt 316

                           
Query: 123 gggtggggaggaggtg 138
           ||||||||||||||||
Sbjct: 317 gggtggggaggaggtg 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 532
Length adjustment: 8
Effective length of query: 130
Effective length of database: 524
Effective search space:    68120
Effective search space used:    68120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)