CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATACGCGGA
ATTCTTTTGATCATTCTCAGATGGCTTGGCTAGAAACCAGTTTTATGATT
TCTAGTTTTATTGTCTTCCCCCTGAACTCACCTCCCTTGCCATCACATAC
ATATTTGTTCCTCCATTTTTCTTTTTTCTTTGTTTTGCATTAACGTTTTT
TTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTACCCCAAAAGTCC
CCCATACCCTCCCCTACCCACCCACTCCTACTTCTTGGCCCTGGCGTTCC
CCTGTACTGAAGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCA
ATGATGGCTGACTAGTTCATCTTCTGAACTCCAGCAAACATTAAACATCT
CCTACTGCCACTCAGGGCCAGCCACTCTTTGATCAGGTATTGGATGTTGA
ATGCATACACATCCTTGAATAACCCTGATATGACTCCAAATTGTTTGTAT
ATCTTGGAAGAATGATGTGTACAAATAATGTTAAGATGATCTGCCAATGA
TATCCTGAAATGTCATCTCTCATGAGCTTTGTGTGCTTATATGATTCATC
TATTAAGATGACCAATAATAAACGAACCCTTCTCTTAGAATATCCGCTTA
CCACCTCCATACAATAACAAACCTAAATACTCCCACCACCTAAATTATTT
ATTCTTTTATCTCTATGATCTACTCATATTCTCTTTACATCTTTA

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAG
AGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGATGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTCCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTCAGAAAATAGAACTTCTTTTCTGATGAATTGAT
ACAATACAATTAAAAGTTGAGAAAGTTAGTCATTGAAGCAGGATTTCTGA
GAAATAAATAAATGAATGACTACTTTCTCAGAATGAAAAATAAGCTATTA
TTGATACTTTTTAAAATGTGTGTGTGTGTGTGTGTGTGTCTGTGTCGTGT
GTGTGTGTGTGTGTGTGTGTNNNNNTNTNNNNTTTTTNTTTTTTTTTNTT
TTTTTTTNTNTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTNNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTGTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTNNTT

Query= MSMg01no263_a13.g1 MSMg01no263_a13.g1 CHROMAT_FILE:
MSMg01no263_a13.g1 PHD_FILE: MSMg01no263_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:50 2005
         (445 letters)



>mm_chr5_41667360_41668204
          Length = 845

 Score =  673 bits (348), Expect = 0.0
 Identities = 414/436 (94%), Gaps = 5/436 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaatacca-aatggcagagaagcacctgaaaaaatgttcagcatccttaat 59
           |||||||||||||| || |||||| ||||||||||| ||||||| |||||||||||||||
Sbjct: 201 tcacctgaggaata-cagaatggctgagaagcaccttaaaaaatattcagcatccttaat 259

                                                                       
Query: 60  catcagggaaatgcaaatcaaaacaaccctgagattccatctcacaccagtcagaatggc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catcagggaaatgcaaatcaaaacaaccctgagattccatctcacaccagtcagaatggc 319

                                                                       
Query: 120 taagatcaaaaattcagatgacagcagatgctggtgaggatgtggagaaagaggaacact 179
           ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 taagatcaaaaattcaggtcacagcagatgctggcgaggatgtggagaaagaggaacact 379

                                                                       
Query: 180 cctccattgttggtgggattccaagcttgtacaaccactctggaaatcagtctggcagtt 239
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 cctccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtctggcggtt 439

                                                                       
Query: 240 cctcagaaaatagaacttcttttctgatgaattgatacaatacaattaaaagttgagaaa 299
           ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| 
Sbjct: 440 cctcagaaaatagaacttcttttctgaagaattggtacaatacatttaaaagttgagaa- 498

                                                                       
Query: 300 gtt-agtcattgaagcaggatttctgagaaataaataaatgaatgactactttctcagaa 358
           ||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtttagtcattgaagcagaattcctgagaaataaataaatgaatgactactttctcagaa 558

                                                                       
Query: 359 tgaaaaataagctattattgatactttttaaaatgtgtgtgtgtgtgtgtgtgtgtctgt 418
           ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||
Sbjct: 559 tgaaaaataagctattattaatacttttttaaatgtgtatgtgtgtgtgtgtgtgtgtgt 618

                           
Query: 419 gtcgtgtgtgtgtgtg 434
           || |||||||||||||
Sbjct: 619 gt-gtgtgtgtgtgtg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)