BAC Information

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BAC

Clone NameMSMg01-264E08
Chromosome5 (Build37)
Map Location 91,182,341 - 91,308,007
singlet/doubletdoublet
Overlap geneCxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
Upstream geneAdamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6
Downstream geneCxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264E08.T7 (MSMg01no264_e08.b1)MSMg01-264E08.TJ (MSMg01no264_e08.g1)
ACCAG405863AG405864
length743835
length of high quality
(start - end)
317 (45 - 361)286 (123 - 408)
definitionCHROMAT_FILE: MSMg01no264_e08.b1 PHD_FILE: MSMg01no264_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:24 2005CHROMAT_FILE: MSMg01no264_e08.g1 PHD_FILE: MSMg01no264_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,307,696 - 91,308,007)(91,182,341 - 91,182,626)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTAACTGTCACAGCAACTTCACAAGAAAGGGTTTTAATACTGCA
TAGGTGGGGCAAGTGGGGTTCAGGGAGGTTGACCTACATCATAGGCAACA
AATGAAGGAGTTAGTGTTCTTAGCCGGCCACTTCTCAGTAAATGCTCTCA
GTGAGAGACACACCCCTGAGACAAATGAAGGCAATTGGAGAAGAGAGAGG
TGACCATGGACAACTGTGTCAGGTCATTCTTCAAATGTTGTCTTTTATAA
AACTACTTTCAGCCAGGTGGTGGTGGTGCATGCCTTTAATCCCAGCACTT
GGAAGGCAGATTTTTTGGACCCCCCCCACCCCAGGCCAGCCTGGTCTACA
GAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTATCTTGAAAAA
AAACAAAAACAAAAAAAAACCCAATAAATAAATAAATAAATAAATAAATA
AAAACTACTTTCAACTTATTTCAATTCTTTTTAATATAAGATAGACCACA
GTAGAAACCTCGTTAATGGTTTAAGAATAATACTTTAAGTAGATCTAAGA
GTACCAAAAATCATTATTTTTTTTAAGTGTGAAAATGTGTCCAAATTTCT
GTGGCACTTTGATTATAGCTTATTAATTGAGTTGGTATGTTAACTGTTAT
TACTATTTTGGGTAAACACTGAGTTAAGTCTTTCCAATCATCC
ATTTTTTTGTAGACGGANATTTTTTAAACAATTTTTTTCTTTNTCCACCA
TGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATGTTGCCAGTTTGGGCCACAGGCAC
CTTTACCCACTGAGCCATCTTATTGGCTCAATAATAGTCAACTTTCTAAC
TCTAAGGGGGGAATTATTCAAATCTACAAACATAGACGGGTAAACATATA
AAAATAAAAAAATAAATATCGACACATTTGTATACTTGACCACTTCATCG
AATTTTTCATTGAGTACTCAATAGAAAGAAGAAATATGCTCCATATCTAC
ATAATGACATGGGTAACTCTCATGACATTAAGTTGAACAAAAGGAGCCCT
ACACAAAATATTACTAGGTTTTCCCCGAACGGCCCTCCAAACCTGACTAT
ATACTTTAATATAAAACTCTCTTTTACTTAAAAAAAAATATATCATCGCT
AAGAGCTTTCTTGTATAGCCATATTGTGACAAATGTCGCCAACCTTTTTG
GCCCATTCTAATACACCAATGACTACTACATTTCTCCTTCCTATGAAATA
ATACATTGCCCTAACATTTATTGGTTTACTTCTCAATTTAAATTAAGCAA
CTAATAAAAAAACTTTCCCCAAAGAACATTCCTGTTCCAAAGCAAATGAT
TTAAAAGGCCAAATTTAACTAACATTTTTGTAAAGCCTCATTGAACCAAA
AGTCAAAAACCGGAAGCCCTGTATATTCTATTTATTCTTTTACAGAATAC
ACAATCCCTAAAGGTCCCAGTTGTCTTAATTAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_e08.b1 MSMg01no264_e08.b1 CHROMAT_FILE:
MSMg01no264_e08.b1 PHD_FILE: MSMg01no264_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:24 2005
         (317 letters)



>mm_chr5_91307458_91308174
          Length = 717

 Score =  549 bits (284), Expect = e-161
 Identities = 305/312 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttaactgtcacagcaacttcacaagaaagggttttaatactgcataggtggg 64
           ||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct: 550 gaattcatttaactgtcacagcaacttcacaaggaagggttttaatattgcacaggtggg 491

                                                                       
Query: 65  gcaagtggggttcagggaggttgacctacatcataggcaacaaatgaaggagttagtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gcaagtggggttcagggaggttgacctacatcataggcaacaaatgaaggagttagtgtt 431

                                                                       
Query: 125 cttagccggccacttctcagtaaatgctctcagtgagagacacacccctgagacaaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cttagccggccacttctcagtaaatgctctcagtgagagacacacccctgagacaaatga 371

                                                                       
Query: 185 aggcaattggagaagagagaggtgaccatggacaactgtgtcaggtcattcttcaaatgt 244
           ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 370 aggcaataggagcagagagaggtgatcatggacaactgtgtcaggtcattcttcaaattt 311

                                                                       
Query: 245 tgtcttttataaaactactttcagccaggtggtggtggtgcatgcctttaatcccagcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtcttttataaaactactttcagccaggtggtggtggtgcatgcctttaatcccagcac 251

                       
Query: 305 ttggaaggcaga 316
           ||||||||||||
Sbjct: 250 ttggaaggcaga 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_e08.g1 MSMg01no264_e08.g1 CHROMAT_FILE:
MSMg01no264_e08.g1 PHD_FILE: MSMg01no264_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:24 2005
         (286 letters)



>mm_chr5_91182141_91182826
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgttgccagtttgggccacaggcacctttacccactgagccatcttattggctcaat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgttgtcagtttgggccacaggcacctttacccactgagccatcttattggctcaat 260

                                                                       
Query: 61  aatagtcaactttctaactctaaggggggaattattcaaatctacaaacatagacgggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagtcaactttctaactctaaggggggaattattcaaatctacaaacatagacgggta 320

                                                                       
Query: 121 aacatataaaaataaaaaaataaatatcgacacatttgtatacttgaccacttcatcgaa 180
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aacaaataaaaataaaaaaataaatatcgacacatttgtataattgaccacttcatcgaa 380

                                                                       
Query: 181 tttttcattgagtactcaatagaaagaagaaatatgctccatatctacataatgacatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcattgagtactcaatagaaagaagaaatatgctccatatctacataatgacatgg 440

                                                         
Query: 241 gtaactctcatgacattaagttgaacaaaaggagccctacacaaaa 286
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaactctcaagacattaagttgaacaaaaggagccctacacaaaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)