BAC Information

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BAC

Clone NameMSMg01-264E22
Chromosome5 (Build37)
Map Location 133,607,393 - 133,747,377
singlet/doubletdoublet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264E22.T7 (MSMg01no264_e22.b1)MSMg01-264E22.TJ (MSMg01no264_e22.g1)
ACCAG405890AG405891
length725757
length of high quality
(start - end)		310 (45 - 354)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no264_e22.b1 PHD_FILE: MSMg01no264_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:26 2005CHROMAT_FILE: MSMg01no264_e22.g1 PHD_FILE: MSMg01no264_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,607,393 - 133,607,698)(133,747,092 - 133,747,377)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTCATTTTTAAGGGACCTCGGCTCAGAACAAAAGAGGAATTGTT
GTTTCATCAACAAGAAGAACCAGGACAAGCCAGATAAAGCAGAGTTGATG
ATTTTATTTAAGATATTTAGAAAAAAATGTATTATATGTACCATGAATAC
TCTATCTGCATGTACACCTGTATGCCAGAAGAGGGCATCAGGTCATACTA
TAGATGGTTGTGAGCTACCACGTGGTTGCTGGGAACTGAACTCAGGACCT
CTGGAAAAGCAGCCTTTTCTCTTAGCCACCGAGCCATCTCTAGCCCCCTA
CTTTTTCNATTTAATCCANANCCAAGTACCAGTGTTATTAGAAAAATAAA
AGAGGATCTCAGAAATACATAATCAAGCAAGATCAAGGCTCACCAGAGCA
GAGGCACAGCTAATTGTCTCAGCACAGATGACCATATACCCTTTTGGGGC
TTTCAAGTTGCATCTCAAAAATGTTGTTAAGTTGCCTATCCCGGTTTTCT
CTCTTTTGATCAGTGAGATTATAGGGCTGCTCTAGGGGTATCTTGGGTCA
AATTACAGTCTGATAAAGTAAAACCTAAGAACCAGTAGAGATGTGCAAGA
GGATAAAGGGAGGTCCTCTTCCTGCGAATGAAGCCTTTAGCAAGATGCTA
GAAAACCCCATGTTTACTGCTGGGG

GCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTGTTCCTGTGTTGAAAACTTAA
TCTATAATTCTGCAGTGTTGAGAGACAGAGCCTCTAAGAAGTGATTCAGG
GTTGCACAGCAGTTTCTGCAGAGATTGAAAAATCTTCTCTCTTGGCGGAA
ACGTTCTTACAACAGGGTGTAAGAGGCAAGGGAAGCAAACAACAGGATAC
TTTAGGACAGGATGTTCACAAAGCGGGTTAAACAGCAGGATGTGCTAAGG
CAGTGGTTCTTAACCTGTGGTTTGCGACCCAGACAGAGGGTCTACTGTCA
GGTATCCTGTACNATAGTTACTCCCACCCCCCCTCACAACTGTAGCAAAA
TTACAGTTGTGAAGTAGCAGTGAAATAATTTTATGGTTGGGGTCACCACA
ACATGAGGAGGTGTATTAAAGGGTCCCAGCATTGGGAAGGTCCAGTGAGA
TACTCCACCCTGCAAGGAAGCCCTTAAGGCGGGAAGTAAATACCTCCAAA
TAGCCCCATTGGCTATGGTGGATGCCCCAAAGGATAAGACTCTGCAGGAA
TCTGAAAGTATTCCATCTGGTGAGATATGAGAGTTTATAGGGGGTCCAGG
ATGTGGGAGTTTAATATTTTTGGTTTTGCCTGATTGTATGAATGTTTGTA
TTGTTTCTTTTATGTATGATACTTGATAAAATCTCTTCCTTCCACCTTAA
TTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_e22.b1 MSMg01no264_e22.b1 CHROMAT_FILE:
MSMg01no264_e22.b1 PHD_FILE: MSMg01no264_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:26 2005
         (310 letters)



>mm_chr5_133607190_133607899
          Length = 710

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctttcatttttaagggacctcggctcagaacaaaagaggaattgttgtttcat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattcctttcatttttaagggacctcggctcagaacaaaagaggaattgttgtttaat 263

                                                                       
Query: 64  caacaagaagaaccaggacaagccagataaagcagagttgatgattttatttaagatatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caacaagaagaaccaggacaagccagataaagcagagttgatgattttatttaagatatt 323

                                                                       
Query: 124 tagaaaaaaatgtattatatgtaccatgaatactctatctgcatgtacacctgtatgcca 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagaaaaaaatttattatatgtaccatgaatactctatctgcatgtacacctgtatgcca 383

                                                                       
Query: 184 gaagagggcatcaggtcatactatagatggttgtgagctaccacgtggttgctgggaact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaagagggcatcaggtcatactatagatggttgtgagctaccacgtggttgctgggaact 443

                                                                       
Query: 244 gaactcaggacctctggaaaagcagccttttctcttagccaccgagccatctctagcccc 303
           |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||
Sbjct: 444 gaactcaggacctctggaaaagcagccagtgctcttagccaccgagccatctctagcccc 503

                 
Query: 304 ctactt 309
           ||||||
Sbjct: 504 ctactt 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no264_e22.g1 MSMg01no264_e22.g1 CHROMAT_FILE:
MSMg01no264_e22.g1 PHD_FILE: MSMg01no264_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:27 2005
         (286 letters)



>mm_chr5_133746820_133747505
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgttcctgtgttgaaaacttaatctataattctgcagtgttgagagacagagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttctgttcctgtgttgaaaacttaatctataattctgcagtgttgagagacagagcctc 499

                                                                       
Query: 61  taagaagtgattcagggttgcacagcagtttctgcagagattgaaaaatcttctctcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taagaagtgattcagggttgcacagcagtttctgcagagattgaaaaatcttctctcttg 439

                                                                       
Query: 121 gcggaaacgttcttacaacagggtgtaagaggcaagggaagcaaacaacaggatacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcggaaacgttcttacaacagggtgtaagaggcaagggaagcaaacaacaggatacttta 379

                                                                       
Query: 181 ggacaggatgttcacaaagcgggttaaacagcaggatgtgctaaggcagtggttcttaac 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggataggatgttcacaaagcgggttaaacagcaggatgtgctaaggcagtggttcttaac 319

                                                         
Query: 241 ctgtggtttgcgacccagacagagggtctactgtcaggtatcctgt 286
           |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctgtgggttgcgacccagacagagggtctactgtcaggtatcctgt 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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