BAC Information

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BAC

Clone NameMSMg01-265F01
Chromosome5 (Build37)
Map Location 16,310,634 - 16,310,940
singlet/doubletsinglet
Overlap genenone
Upstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265F01.T7 (MSMg01no265_f01.b1)MSMg01-265F01.TJ (MSMg01no265_f01.g1)
ACCAG406613AG406614
length742741
length of high quality
(start - end)
311 (45 - 355)554 (77 - 630)
definitionCHROMAT_FILE: MSMg01no265_f01.b1 PHD_FILE: MSMg01no265_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:46 2005CHROMAT_FILE: MSMg01no265_f01.g1 PHD_FILE: MSMg01no265_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTAACCTGTCTTTTCCTGAGCCCACTCCATCAATCCATGACATA
TTTTGTATAGGTTTTATGTATTTTAAAAGACCTTTTATTTCAGTGTTGTA
AAGAGATATTTGAAGGTTTATGAGAGTTAGAGGTTAACTATTATCTTCAT
GTTTCTATAAGAAACAGACTCTAGAAGACAGAAATATTTTGTGCCTCCCT
ACTGGATCCTCATGTCATGTGCTTTCTTGCTGCTGTGCTACAACTGCTGC
TAGTAATGCTACAGAGTAAAGCTTTATGGGGAAGGAAAGAGAAAAAAAAA
TCAGGGTCCTGTTTTTATTTGCCACCCTCGCCCCACTATGATCCAAAATT
CACATTAACCTAATAAATATTTTGTTAAAAAGAAAAGTTTTTTATTTTGA
TTTGCTTCCCAGCTACGTTTGAAATTGCTGAGGACTATCCACTCTTTCAA
GCCATTTGTAAGAGGAATGTCACAGATGAAGACATTGCACATGGTGACAG
GCTGACAGTAGGTGGCCATTTTTGTGGGAGATGGCATATATTTTCACAGC
AGGCATGCAGGGCATAGTCTCTGGGACATTTTATAAGACTACGACATTTT
CAAAAATGAATATATGTGTATGTGTGCCTATGTATCTGAGTGTCTCGGTG
TGTGATTTTGATACTTTGCAGGACTAATTCATATGTTTCTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGAATTCAGTAAGAAGGTTA
CCTATTCAAATTTACTTCTTATAGACCCATAAAACTAATTAGGCATTACA
AAGGACAGAGCTGAAATAGCTCAGGGCTGGTATGCAGAGTGATTACTTGG
GACAATAGCCAGTCTTACCCAGACAAGGGAATTCACAATGGCCTAGAGAA
TAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCAGACAGGTTTCTT
CACTAGGCCCAAAATAATCAGCATAATCAGGCATTTACTAGAACCCCTGG
TGGTGGGCTTAACAATATACTAGCATTACACCTGGCTCCCTTCTTAGTGG
CAGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGT
CACTGTAACTTGGCAGATGTATCTTACCTGGTTTCTTGTCGCTCTCCTGT
ATAAAAAGTATGATGCTCTACTTAAAAAAATACATTCAGATTCTACAGAA
TCTTGTGTGTCACTTCTGTCTGTCATTTGTGAACTTCTTGTCTACCTGCA
ACTAGAGACCCATTCTACGCCGACAGGGACCAAANAGGGTCTGCGGCAGA
GCATAGCCCCAAGAACNTTAATTAATTTTTCTTTTTCCTAAGAAAGCACT
GTATCCTATCAAGCCACAATAAACCCCCTAAGGTACCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_f01.b1 MSMg01no265_f01.b1 CHROMAT_FILE:
MSMg01no265_f01.b1 PHD_FILE: MSMg01no265_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:46 2005
         (311 letters)



>mm_chr5_16310430_16311140
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttaacctgtcttttcctgagcccactccatcaatccatgacatattttgtat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttaacctgtcttttcctgagcccactccatcaatccatgacatattttgtat 264

                                                                       
Query: 65  aggttttatgtattttaaaagaccttttatttcagtgttgtaaagagatatttgaaggtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggttttatgtattttaaaagaccttttatttcagtgttgtaaagagatatttgaaggtt 324

                                                                       
Query: 125 tatgagagttagaggttaactattatcttcatgtttctataagaaacagactctagaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgagagttagaggttaactattatcttcatgtttctataagaaacagactctagaaga 384

                                                                       
Query: 185 cagaaatattttgtgcctccctactggatcctcatgtcatgtgctttcttgctgctgtgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaaatattttgtgcctccctactggatcctcatgtcatgtgctttcttgctgctgtgc 444

                                                                       
Query: 245 tacaactgctgctagtaatgctacagagtaaagctttatggggaaggaaagagaaaaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 tacaactgctgctagtaatgctacagagtaaagctttatggggaaggaaagagaaaaaag 504

                  
Query: 305 aatcagg 311
           |||||||
Sbjct: 505 aatcagg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)