BAC Information

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BAC

Clone NameMSMg01-265F24
Chromosome5 (Build37)
Map Location 88,322,924 - 88,323,483
singlet/doubletsinglet
Overlap geneOdam
Upstream geneUgt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494
Downstream geneBC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265F24.T7 (MSMg01no265_f24.b1)MSMg01-265F24.TJ (MSMg01no265_f24.g1)
ACCAG406654AG406655
length866754
length of high quality
(start - end)		80 (45 - 124)662 (77 - 738)
definitionCHROMAT_FILE: MSMg01no265_f24.b1 PHD_FILE: MSMg01no265_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:50 2005CHROMAT_FILE: MSMg01no265_f24.g1 PHD_FILE: MSMg01no265_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATTGCCAGTTTCTGGTATTCTGGAAGGTTATGGAGTTAATGAA
GTTATTTATTTATTTATTTATCCCCGCTGTGTGTGNNNNGNAACACCCCC
CCCCCCCCCCNNNNNCCNNCACCCCCCCACCNCCACCCNCAAACCAATAA
ACACACCACAAAACCCCCACCACCCACCCCCACACACCCCATACCCACCC
AACCACTCCCCCACCCACCCCTCACCCCCCACCCCCTAAACATAAAAACA
CAAAACAAACATACCCACTACCCCCCTCCTTTTTCCCACCCAACCAACAA
CACCACCCAAAAAACATANGTATTTTTTATAATTCCCCCCCANACTTCCC
CCCAAATTTTATAAAAATATAAATTAAAAACCATACCCCCCCCCCCCCAC
AAAAAAAAAAAATAAAAAACACTATAAACAACCCCCCTCACACCCCCCCC
CCCTCCCACCACATCATAACACACACTTCACCCACCCCCCACCCAAAAAC
ACCTCACCCCACCCACCACCACCTCTCAACACTATACAATACACCCCAAC
TAAACCCACCTCCTCACCCCCCACCCTAAACTACCCCCACATACATCCCA
ATCAACACCATCACACACCCAACCACAACAACAACAACCACCCCTACCAC
CCAACACACCCACCCACACCAAACCACCTCAACCCCACCAACAACAATAC
ACCCAAAACCACAACCACCACAACCACACCAACCACAACCATAACCAAAT
AAACCAACCCCACACACCACCCCCACCAACTCAAAACTCCTTCCTCTTAA
CCCAACCACCACCCAG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACCCATCTTTCTGTGTATTTG
TGGTGTGCTAAGAGCACACACAGTCAATGTCTGTTTCAAAACCATTTTGG
AGGACCAGGTGTGGTGGTATACAGTTTAAGCACATTCAGAGTCAGGAACT
GGTAGATTTCTATGAATACAAGGCCAGCCTGGTCTACCTACTAAGTAGTT
CAAGGATAGTCAAGGCTATAGTATGAGGTCCTGCCTTAAAAAAAGGCAAA
ACAGAGCAAAACAAAAATAAAAGAAAACAGATTTGATATTCATGGAGAAT
GAGTCACAAACAAGCTGATAGAATGAACCTAGGAAAAATAATCAGATACT
GACATGAGAAAAATCGACACATAGTTTAATCTCAACACCAATCAGTACAC
TCATCACAAATCTATTAATTAGTATATATTTATTCTCTTGAATGACATAA
GTTTAGAGGCATTCTTTATTAACACAGTTATCAAATTAATCTGTTATAAG
CTTTAGTGTATGTGTGTGAGCACACATGCATGCTCTTGGGTGTCACATGA
ATGTTTAGAAGATTATCATTGCAATCAAGTTTCACTATATTATGCAATGT
TTTAAGAAGGCGTAGCTTTTTGGTTAAACGTGCTTTATTTCTAGTGCTTG
CCATTTTCCAGGTTATATAATCCTAGAATATTTGGGAGAAAAGATAGCAT
TATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_f24.g1 MSMg01no265_f24.g1 CHROMAT_FILE:
MSMg01no265_f24.g1 PHD_FILE: MSMg01no265_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:50 2005
         (662 letters)



>mm_chr5_88322419_88323483
          Length = 1065

 Score =  857 bits (443), Expect = 0.0
 Identities = 531/571 (92%), Gaps = 22/571 (3%)
 Strand = Plus / Minus

                                                                        
Query: 102  aagcacattcagagtcaggaactggtagatttctatgaatacaaggccagcctggtctac 161
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 1065 aagcacattcagagtcaggaactggtagatttctatgaataccaggccagcctggcctac 1006

                                                                        
Query: 162  ctactaagtagttcaaggatagtcaaggctatagtatgaggtcctgccttaaaaaaaggc 221
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1005 ctactaagtagttcaaggatagtcaaggctatagtatgagatcctgccttaaaaaaaggc 946

                                                                        
Query: 222  aaaacagagcaaaacaaaaataaaagaaaacagatttgatattcatggagaatgagtcac 281
            ||||||||||||||||          |||||| |||||||||||||||||||||||||||
Sbjct: 945  aaaacagagcaaaaca----------aaaacaaatttgatattcatggagaatgagtcac 896

                                                                        
Query: 282  aaacaagctgatagaatgaacct-----a--ggaaaaataatcagatactgacatgagaa 334
            ||||||||||| |||||||||||     |  ||||||||||||||||| |||||||||||
Sbjct: 895  aaacaagctgaaagaatgaaccttgttcatgggaaaaataatcagatattgacatgagaa 836

                                                                        
Query: 335  aaatcgacacatagtttaatctcaacaccaatcagtacactcatcacaaatctattaatt 394
            |||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 835  aaatagacacatagtttaatgtcaacaccaatcagtgcactcatcacaaatctattaatt 776

                                                                        
Query: 395  agtatatatttattctcttgaatgacataagtttagaggcattctttattaacacagtta 454
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  agtacatatttattctcttgaatgacataagtttagaggcattctttattaacacagtta 716

                                                                        
Query: 455  tcaaattaatctgtt---ataagctttagtgtatgtgtgtgagcacacatgca-tgctct 510
            |||||||||||||||   |||||||||| ||| |||||| | ||||||||| | ||| ||
Sbjct: 715  tcaaattaatctgttatcataagctttattgtgtgtgtgcgcgcacacatg-agtgcact 657

                                                                        
Query: 511  tgggtgtcacatgaatgtttagaagattatcattgcaatcaagtttcactatattatgca 570
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 656  tgggtgtcacatgaatgtttggaagattatcattgcaatcaagtttcactatattatgca 597

                                                                        
Query: 571  atgttttaagaaggcgtagctttttggttaaacgtgctttatttctagtgcttgccattt 630
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 596  atgttttaagaaggtgtagctttttggttaaatgtgctttatttctagtgcttgccattt 537

                                           
Query: 631  tccaggttatataatcctagaatatttggga 661
            |||||||||||||||||||||||||||||||
Sbjct: 536  tccaggttatataatcctagaatatttggga 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1065
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1055
Effective search space:   687860
Effective search space used:   687860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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