BAC Information

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BAC

Clone NameMSMg01-265J22
Chromosome5 (Build37)
Map Location 151,538,719 - 151,539,034
singlet/doubletsinglet
Overlap geneAprin
Upstream geneB3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393
Downstream geneLOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265J22.T7 (MSMg01no265_j22.b1)MSMg01-265J22.TJ (MSMg01no265_j22.g1)
ACCAG406835AG406836
length760765
length of high quality
(start - end)
320 (46 - 365)44 (76 - 119)
definitionCHROMAT_FILE: MSMg01no265_j22.b1 PHD_FILE: MSMg01no265_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:10 2005CHROMAT_FILE: MSMg01no265_j22.g1 PHD_FILE: MSMg01no265_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGACACAGTTGTAATATTTTTACAATAGTTACCTTTAATTTAA
ACTCAAGCTGGGGCAGAACAGAAAGCAGCAAATGGCTGTCAATGTTGTAG
AGTTCCAAGATCAAATCAAAGACATGCTCAGACAAATCACTGATAGATGT
TTTCCCAAGCATCAGAACCTGGTTAAAAAACTGTTAAGAAGAAAATCTAG
CATTAAAAGAAATGCCATAGATAAGCTGTCAAGTTTTGATTATTATTTTA
TTAAAATTTTTCTTATTATAAATGAAGTCAAACAAGCAACACAGAAACAT
TTTCCATCTGGGAAACCTTCTATTAGATCATCTCCCCTGATTCACTAATG
ATCAATATCAGCAAACACCCTTACCATCCAAATGTTTTATTCCTCCACTA
AAATACTCAACTATATTCTGACTGATACTGGTGTCAACTCAAATGCTAAA
ATATTACTTCTGGGGCTATCCTTGAAGAAGCTTTTAGAAAAGACGTGAAT
CCACAGTGTCCGTGGGGGAAGCATCTGCAAAGGCAGAACAGAGGTGGCTC
CTCCTTCCTTTCTGGAAACAAGGTGCCCCTTCCTCCCCTGACCTCGGACA
TCACAACTCTAGGTTCTCCAGGCTCTGGGTACAAAGATTTGCACAAGCAA
CCACCATCTGTGTTCTCCAGCCTTGGATGTGGACTGAGAGTTAAGCAATC
AGCTTCCCTG
CCATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTGGGAGCACTGTGGTGGGAG
ATGGAGGGGGAGGAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNTNNNNNTNNN
NNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTNTNNTNNNNNNNNNNNNN
NTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCNNNNNNNNNNNNNNTTNT
TTTTTTTTCCCCCCCCCCGAGGGCTGGAGTAAAAGGGGGGGGGGGGGGGG
GGGGGGGGGGCTAGAAGAACGACTGGGACGGGACTGGCGGGGTTCTTNNN
NNNNNNNNNNNNNTTCTNAAAAAACCTCTTATACACTGGGCGGTGACTCT
ACNNNNNNNTNNNNNNNNNNNTNNNTTNTNNNNTNNNNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNNTTTTTTNTNNTTTTTTTTTTNTTTNTTTT
TNTNNTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTNNNNNT
TNNNNTTAAATAAAAACACTAAACTACANNNNNNNNNNNNNTTNTNNTNA
AACGCAGACTTAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_j22.b1 MSMg01no265_j22.b1 CHROMAT_FILE:
MSMg01no265_j22.b1 PHD_FILE: MSMg01no265_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:10 2005
         (320 letters)



>mm_chr5_151538592_151539311
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgacacagttgtaatatttttacaatagttacctttaatttaaactcaagct 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattcattgacacagttgtaatagttttacaatagttacctttaatttaaactcaagct 384

                                                                       
Query: 65  ggggcagaacagaaagcagcaaatggctgtcaatgttgtagagttccaagatcaaatcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggggcagaacagaaagcagcaaatggctgtcaatgttgtagagttccaagatcaaatcaa 324

                                                                       
Query: 125 agacatgctcagacaaatcactgatagatgttttcccaagcatcagaacctggttaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agacatgctcagacaaatcactgatagatgttttcccaagcatcagaacctggttaaaaa 264

                                                                       
Query: 185 actgttaagaagaaaatctagcattaaaagaaatgccatagataagctgtcaagttttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actgttaagaagaaaatctagcattaaaagaaatgccatagataagctgtcaagttttga 204

                                                                       
Query: 245 ttattattttattaaaatttttcttattataaatgaagtcaaacaagcaacacagaaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttattattttattaaaatttttcttattataaatgaagtcaaacaagcaacacagaaaca 144

                           
Query: 305 ttttccatctgggaaa 320
           ||||||||||||||||
Sbjct: 143 ttttccatctgggaaa 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)