BAC Information

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BAC

Clone NameMSMg01-268D08
Chromosome5 (Build37)
Map Location 42,925,534 - 43,102,397
singlet/doubletdoublet
Overlap genenone
Upstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268D08.T7 (MSMg01no268_d08.b1)MSMg01-268D08.TJ (MSMg01no268_d08.g1)
ACCAG408713AG408714
length719718
length of high quality
(start - end)		277 (437 - 713)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_d08.b1 PHD_FILE: MSMg01no268_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:27 2005CHROMAT_FILE: MSMg01no268_d08.g1 PHD_FILE: MSMg01no268_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,925,534 - 42,925,810)(43,102,111 - 43,102,397)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAATAGAAAAATGCTAGAAGGACCTGAAGTATCAGATTTTAAAT
TATGTAACAGAGTCACAGAAACACCTCAGTACTGGTCATACTGGCATAAA
AAAAAAAAGACATGCTTAAGAGAGTAGAGTAGGATGGAGGACAGCCTAAT
AAACCTACCAGCTACAATAATCTGGCTCTTGACAATGGAACCATCAGCAT
GCCTGGGGAAAACTATTTTCTTCAAATGGCACTGAGAAAACTCAATACAC
ACATACTTCTTGCAGTAAACAATGTCAAGTGCACCTTTTAGTTTGCCTAA
TTAGTTTCTCTGTATTTCTGTTTTTCACATCCCCCTATCAAAATGTTCAA
TATCTATTATATACTGGTCTCTAAGACAACATTCTGTCACACTGAGTCCT
AATCTCCATTGGCATGGATCATATTGAGAAGCAAACAAATGATTAGGATG
ATCACCAAGCACACATGCGTGCCATCTGGATGGAGCCATGACTTCTCTAC
AGACAGTCAGCTAGGTCATCTCATCATTATGGATCCAGACCTGACAGATT
TCTATAAAAACAGTCACCTGGAAGAAAGACTCTGCCGGACCCATGAGATC
CTTTATTCTGAGATTTTATTCTCTTATAGTTCAATGCCCATTGGCTTTTT
ATTTTTCTGATATCTGTTN

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATTGTTAATCACAATAGCAGC
ATTGCTTCAGGAAACCGAGATAGGAAAAAACATTCATAGTAGAAGCCCCA
ATTTACTGGGACAGAAAATCATGTTATTTGTTGTATTGTCCAGAATTACC
AGGAAGTGACTTACTTCCTTAGGAACAAGAGCTGACATGAGAGAGACCTA
TGGCTACAGAGTAAGGAGACACCTCTCTTGTTGCCAATCTATGACACGAA
ATGTGAGGATGTTTATTCCACATATTAATTATAATCAATTTGCATGAGCC
CTGCCTCCCCAGAATGATGTGCTCAGTATTCAGAGTTCTCAGTCCTACAT
GAGGCTGCCACTCTGTTTTCTTATATGTCCTTTATTCATATTTGCTTTCT
GCTTTCCTTTGGGCTTTAAAAAGGACAGTTGCAACTAGAGCAAAACCAAC
ACGCAAACACGTAAATGTACCTCAAAATCTCTATTTTTTCTCATGAGGTT
TGAGAGCAGGAAGTTTGACACTTTCAATAGTTGGTTTGGTTCCTCACCAT
CAATAAGACACTGACTTCCCACTTTTCCTCCTATCTCTCAGCCTCAGCCT
TATCCTACCTCATGTTCTGTCTGCTTTTTGTCTCTTGCTTCTTTCCCATG
TTTCCATGTAACAGATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_d08.b1 MSMg01no268_d08.b1 CHROMAT_FILE:
MSMg01no268_d08.b1 PHD_FILE: MSMg01no268_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:27 2005
         (277 letters)



>mm_chr5_42925334_42926010
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacactgagtcctaatctccattggcatggatcatattgagaagcaaacaaatgattag 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacactgagtcctaatctccactggcatggatcatattgagaagcaaacaaatgattag 260

                                                                       
Query: 61  gatgatcaccaagcacacatgcgtgccatctggatggagccatgacttctctacagacag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gatgatcaccaagcacacatgcgtgccatttggatggagccatgacttctctacagacag 320

                                                                       
Query: 121 tcagctaggtcatctcatcattatggatccagacctgacagatttctataaaaacagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagctaggtcatctcatcattatggatccagacctgacagatttctataaaaacagtca 380

                                                                       
Query: 181 cctggaagaaagactctgccggacccatgagatcctttattctgagattttattctctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctggaagaaagactctgccggacccatgagatcctttattctgagattttattctctta 440

                                                
Query: 241 tagttcaatgcccattggctttttatttttctgatat 277
           |||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tagttcaatgtccattggctttttatttttctgatat 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no268_d08.g1 MSMg01no268_d08.g1 CHROMAT_FILE:
MSMg01no268_d08.g1 PHD_FILE: MSMg01no268_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:27 2005
         (287 letters)



>mm_chr5_43101911_43102597
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttattgttaatcacaatagcagcattgcttcaggaaaccgagataggaaaaaacattca 60
           |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct: 487 cttattgttaatcacaatagcagcattgcttcaggaaaacgagttgggaaaaaacattca 428

                                                                       
Query: 61  tagtagaagccccaatttactgggacagaaaatcatgttatttgttgtattgtccagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tagtagaagccccaatttactgggacagaaaatcatgttatttgttgtattgtccagaat 368

                                                                       
Query: 121 taccaggaagtgacttacttccttaggaacaagagctgacatgagagagacctatggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taccaggaagtgacttacttccttaggaacaagagctgacatgagagagacctatggcta 308

                                                                       
Query: 181 cagagtaaggagacacctctcttgttgccaatctatgacacgaaatgtgaggatgtttat 240
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagagtaagaagacacttctcttgttgccaatctatgacacgaaatgtgaggatgtttat 248

                                                          
Query: 241 tccacatattaattataatcaatttgcatgagccctgcctccccaga 287
           ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tccacttattaattataatcaatttgcatgagccctgcctccccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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