BAC Information

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BAC

Clone NameMSMg01-269D12
Chromosome5 (Build37)
Map Location 23,780,204 - 23,780,841
singlet/doubletsinglet
Overlap genenone
Upstream geneLhfpl3, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244
Downstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269D12.T7 (MSMg01no269_d12.b1)MSMg01-269D12.TJ (MSMg01no269_d12.g1)
ACCAG409406AG409407
length730727
length of high quality
(start - end)
641 (43 - 683)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no269_d12.b1 PHD_FILE: MSMg01no269_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:38 2005CHROMAT_FILE: MSMg01no269_d12.g1 PHD_FILE: MSMg01no269_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGGCTTCACAGATACTGAGCCAGCACTCTGTCACTAAGCTATGCCTG
CAGCCCAGTGTTGCCAATCAGAGTTTTTGATTTTCATTCTGAGATGGGGT
GTCACTCTTGCGAGACTTCCAGAGTAGCAGCAACTGAGACCATGTGCCGC
TGTGCCCAGGTCCAGTGCTGTTAGTCCTAATGAAGATGATTCTGAAGTTC
CTCTGTTTGGTGTGGTTTGTGCTGGAGGAGTTTGGTATACAGTCTTGTCA
GTGAGGTGGTTCTGGTCATGTTCTAGTTTTCTGAATTATTATGTGGTTCT
TTGTGCAATGATTGGATGCCCTTCTCCCAGACCCCAGCCTATAGAGAGTG
GTGCTTCAATACTTGAACAGCACTGTGGCCTGAATACTGATGTTTAGCAA
AGAGGTCGCTATAGGAAGCCCCTTTCCACCATCGAGGAAGGTCATAGCTC
AGTGTAGGCAGAGAGGGTTGCCACCCCTGTTTTGTGCACACGCCATGTAG
GCACACCTGTGGCACATGACATAAGGTAGGAGTATGGCATGTAGAGAGCC
TCTGCTAAGATTCAGGATGCTTTGGAGTTTGAATTAGGCCCTGACTCCTG
CTAGCTGTATGAGCATGAGTAATTTATGCAATTTCCTTTACCCTTGCTGT
CCTCATCAGAAAAACAAGGAAAGTGCTGGT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGGGTTCCCTGTTGGTAGAACTATTT
GGAAAGGATTACCAGGTATAGCTTTTCTGGGAAGTAGTTGCCCCTTTAAT
TCCAGTACTCGGGAGGCAGAGGCAGGTGGATCTCTGAGTTCAAGGCCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTACAGGAAAAAAACA
AAACAAAACAAAAAAAAAACCTCCAAAATACCCAAAACCCATAAATGAAT
GAATGAATGAATGAATGAATGAATGAATTGTATGGTTTTGTTGGAATGGG
TGTGACCTTGTTGGATTATAGTGTCCAAGGGAGTGAGCTCTGAGATTTCA
AAAGCCCACACCAGGTCCCATCTCTGCCCGCCTGCCCCATGCCTTGGCTG
TTGTCTTTTTAAATAAAGGGCTAAAGGACTAATCCTCTGAAACTGTAAGC
AAGCTCCCAATAAATGCTTTCTTCTCTAAGTTGCTTTAGTCATAGTATCT
CTTCATAGCAGTGAACTGTAACTAAGGTAGCAATTTATTTTAACAAGTGT
AGTGGTTTGAATAGGTATGCCTCATACACTTGCGTTTAAATGCTTGGATG
GTAGAAAATGGCACTATTGGAAAGTGTGGCCTTGTTAGAGTAGGTGTGGC
CTTGTTGGAGGAATTGTTTCACTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_d12.b1 MSMg01no269_d12.b1 CHROMAT_FILE:
MSMg01no269_d12.b1 PHD_FILE: MSMg01no269_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:38 2005
         (641 letters)



>mm_chr5_23780043_23781083
          Length = 1041

 Score = 1218 bits (630), Expect = 0.0
 Identities = 636/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagggcttcacagatactgagccagcactctgtcactaagctatgcctgcagcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggaattcagggcttcacagatactgagccagcactctgtcactaagctatgcctgcagcc 740

                                                                       
Query: 64  cagtgttgccaatcagagtttttgattttcattctgagatggggtgtcactcttgcgaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagtgttgccaatcagagtttttgattttcattctgagatggggtgtcactcttgcgaga 680

                                                                       
Query: 124 cttccagagtagcagcaactgagaccatgtgccgctgtgcccaggtccagtgctgttagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cttccagagtagcagcaactgagaccatgtgccgctgtgcccaggtccagtgctgttagt 620

                                                                       
Query: 184 cctaatgaagatgattctgaagttcctctgtttggtgtggtttgtgctggaggagtttgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cctaatgaagatgattctgaagttcctctgtttggtgtggtttgtgctggaggagtttgg 560

                                                                       
Query: 244 tatacagtcttgtcagtgaggtggttctggtcatgttctagttttctgaattattatgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tatacagtcttgtcagtgaggtggttctggtcatgttctagttttctgaattattatgtg 500

                                                                       
Query: 304 gttctttgtgcaatgattggatgcccttctcccagaccccagcctatagagagtggtgct 363
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gttctttgtgcaatgaagggatgcccttctcccagaccccagcctatagagagtggtgct 440

                                                                       
Query: 364 tcaatacttgaacagcactgtggcctgaatactgatgtttagcaaagaggtcgctatagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcaatacttgaacagcactgtggcctgaatactgatgtttagcaaagaggtcgctatagg 380

                                                                       
Query: 424 aagcccctttccaccatcgaggaaggtcatagctcagtgtaggcagagagggttgccacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagcccctttccaccatcgaggaaggtcatagctcagtgtaggcagagagggttgccacc 320

                                                                       
Query: 484 cctgttttgtgcacacgccatgtaggcacacctgtggcacatgacataaggtaggagtat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctgttttgtgcacacgccatgtaggcacacctgtggcacatgacataaggtaggagtat 260

                                                                       
Query: 544 ggcatgtagagagcctctgctaagattcaggatgctttggagtttgaattaggccctgac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggcatgtagagagcctctgctaagattcaggatgctttggagtttgaattaggccctgac 200

                                                 
Query: 604 tcctgctagctgtatgagcatgagtaatttatgcaatt 641
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tcctgctagctgtatgagcatgagtaatttatgcaatt 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)