Query= MSMg01no269_m11.b1 MSMg01no269_m11.b1 CHROMAT_FILE:
MSMg01no269_m11.b1 PHD_FILE: MSMg01no269_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:18 2005
(317 letters)
>mm_chr5_92498940_92499653
Length = 714
Score = 551 bits (285), Expect = e-161
Identities = 306/315 (97%), Gaps = 5/315 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctcctatgttcatggtggagtggatgccagtggaaagccccaggaagcagttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattcctcctatgttcatggtggagtggatgccagtggaaagccccaggaagcagttt 455
Query: 64 atggccaaaatgtacgtcacaaattaacgtattttcaaaatgtcttagaattaagatggc 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atggccaaaatgtaagtcacaaattaacgtattttcaaaatgtcttagaattaagatggc 395
Query: 124 ttt-aaaatgtagcctttcggtaggtgtttttagtgtgatcttttgctatagttttagta 182
||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 394 tttaaaaatgtagcctttcattaggtgttttta----gatcttttgctatagttttagta 339
Query: 183 gaactgtatattgagatgttttcaaaaggagagcatggactgctttatacatatagttga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaactgtatattgagatgttttcaaaaggagagcatggactgctttatacatatagttga 279
Query: 243 gaaagcatattttgcatgttacaggaatgtatgaaataactgatcttgatgggaagagag 302
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gaaagcatattttacatgttacaggaatgtatgaaataactgatcttgatgggaagagag 219
Query: 303 gacggtagagggttt 317
|||||||||||||||
Sbjct: 218 gacggtagagggttt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 714
Length adjustment: 9
Effective length of query: 308
Effective length of database: 705
Effective search space: 217140
Effective search space used: 217140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_m11.g1 MSMg01no269_m11.g1 CHROMAT_FILE:
MSMg01no269_m11.g1 PHD_FILE: MSMg01no269_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:18 2005
(290 letters)
>mm_chr5_92360119_92360804
Length = 686
Score = 439 bits (227), Expect = e-128
Identities = 272/289 (94%), Gaps = 4/289 (1%)
Strand = Plus / Plus
Query: 1 acttgttacagaagaaatttttgcctggataggtagttgactcttcaagccatttagaat 60
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 acttgttacagaagaaaagtttgcctggataggtagttggctcttcaagccatttagaat 260
Query: 61 gtgttctactaaatacattcagagtatttgtattcattgtacagataagagcggtagccc 120
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 261 gtgttctactaaataccttcagagtatttgtattcattgtacagataagaactgtagccc 320
Query: 121 attccagtggcaggtaccatgaaagaagtaacttaaaaacaatggaaatatattgtacac 180
||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 321 attccagtggcaggtaccatgaaaggagtaacttacaaacaatgggaatatattgtacac 380
Query: 181 aactatacatgtttagaaatctacttggggggctgacatttgacatttgacatgtgaacc 240
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 aactttagatgtttagaaatctacttgggggactgacatttgacatttgacatgtgaacc 440
Query: 241 tccttcctggctcacagacagcctaaaactttgctgtgtcttctcatgc 289
|||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcct----ggttcacagacagcctaaaactttgctgtgtcttctcatgc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 686
Length adjustment: 9
Effective length of query: 281
Effective length of database: 677
Effective search space: 190237
Effective search space used: 190237
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
