BAC Information

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BAC

Clone NameMSMg01-270C19
Chromosome5 (Build37)
Map Location 93,628,304 - 93,753,471
singlet/doubletdoublet
Overlap geneCcni, 2010109A12Rik, Ccng2
Upstream geneVdp, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, LOC100040826
Downstream geneLOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270C19.T7 (MSMg01no270_c19.b1)MSMg01-270C19.TJ (MSMg01no270_c19.g1)
ACCAG410086AG410087
length730766
length of high quality
(start - end)		323 (41 - 363)239 (118 - 356)
definitionCHROMAT_FILE: MSMg01no270_c19.b1 PHD_FILE: MSMg01no270_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:46 2005CHROMAT_FILE: MSMg01no270_c19.g1 PHD_FILE: MSMg01no270_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,628,304 - 93,628,623)(93,753,234 - 93,753,471)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAATACACTCTTGGAAATCTTTCTTAAGAACATAAGGAAAAAGATGGAAA
GCTAAAATTAGAAAATCAAATTCTTACGACGATATATGCAAAACCTCGTA
CCATCTCTAGTGCTTTTCTAGCTGAAGCAAGCCCATTTCCTTTTTCTGGA
GCTGCTGCTTTCAAAACAAAAAACTGTGTATATTTTGAGATTTTTCTAGA
GAACTGAATTGTCATATGAAGAAAGTTTATCAATAACTCCTTTAGTACAA
AATAACCCGTTTGGTATCTAAAAATACAGGCATTCTAGTCCCTGGTATTA
GAAAAGCTGCCTGTTAAAGGCTGAGGACTAGCTCAGCCACGGGAAAGGGT
CACTCTTCTTCCCTCACCATGGCATGCTGCTCAGGGCTGCTCAGGGCTGT
GCAGTGTGGGCCCTATTTTCAGCCTTTTTGAGGTGCTACCCATGCTGGGG
TGGACTTTGATATATCTATTGAGTCGTTTTTGATCCTGTAAGTAACTCCA
ATAAAGCTCACTGATTTACCAAGGACTTTAGGGGTATCTGTACTTTGATC
TGTTGTGGGCTATCTCTCTACTTGTGGGGACAAGTAGACATGTATTGTGC
CTCCTCAGGAAGTCTGTCACACAGCAGCAAGCTTCGTGTTAAAAGCACCC
AGTTCAGAGTTTGGTCCCAAGGATTACTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTCATGCAAATGAAGCATTCCCAGCACCT
CAGCCTCAGTTAATGACGAACACTCACCCCAAAAATCCCTACCCACTCCC
CAAGGTTGATACAACCCCAATGATGAGAGCTGATACGTTGAAAACCATCT
TCAGTAAAGGTTATTTCTCCTGTAGTTCTGTTGATGTCGTTCCCGTCTAA
TCCACTCACCCAGATAAACTTCATTCCTTCCAGTCCAGCCCAGTGTGCTG
TGTTCCTGGATACCCTGAGAACAGAAGCAGACTCCAGCAGCAACCTCCCT
GTTGATATGAGGTGAGGCTGGCGAATAAGTGGTCTTTTATGTCGTTCAGG
AAGAGCTTAGGGGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTTTTTAAAACTAAATCTAATTTTATATTC
CAATATTATTCTAATTACACCCCACTCTTCAACCGTTCATATTATCCCAT
GCCTTATCCTACTTATATTATGCCCTATCCCTAAATCCCGTTTCCCCATA
CATGTGCTTAATCCCCCACACTCCACCTATAATCCCGTTTAAATCCATAT
ATGTACTTCTTGCGTCTTCCCCTAAGCATTCTCATCCTAATGTATATTAT
CACCACATCCCCTTACTATCTACATATCCTCCCCCCCTCCTCTATAATCT
CCCTATATTTACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_c19.b1 MSMg01no270_c19.b1 CHROMAT_FILE:
MSMg01no270_c19.b1 PHD_FILE: MSMg01no270_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:46 2005
         (323 letters)



>mm_chr5_93628101_93628823
          Length = 723

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaatacactcttggaaatctttcttaagaacataaggaaaaagatggaaagct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaatacactcttggaaatctttcttaagaacataaggaaaaagatggaaagct 263

                                                                       
Query: 64  aaaattagaaaatcaaattcttacgacgatatatgcaaaacctcgtaccatctctagtgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaattagaaaatcaaattcttacgacgatatatgcaaaacctcgtaccatctctagtgc 323

                                                                       
Query: 124 ttttctagctgaagcaagcccatttcctttttctggagctgctgctttcaaaacaaaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttctagctgaagcaagcccatttcctttttctggagctgctgctttcaaaacaaaaaa 383

                                                                       
Query: 184 ctgtgtatattttgagatttttctagagaactgaattgtcatatgaagaaagtttatcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtgtatattttgagatttttctagagaactgaattgtcatatgaagaaagtttatcaa 443

                                                                       
Query: 244 taactcctttagtacaaaataacccgtttggtatctaaaaatacaggcattctagtccct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taactcctttagtacaaaataacccgtttggtatctaaaaatacaggcattctagtccct 503

                               
Query: 304 ggtattagaaaagctgcctg 323
           ||||||||||||||||||||
Sbjct: 504 ggtattagaaaagctgcctg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_c19.g1 MSMg01no270_c19.g1 CHROMAT_FILE:
MSMg01no270_c19.g1 PHD_FILE: MSMg01no270_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:46 2005
         (239 letters)



>mm_chr5_93753124_93753762
          Length = 639

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacactcaccccaaaaatccctacccactccccaaggttgatacaaccccaatgatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaacactcaccccaaaaatccctacccactccccaaggttgatacaaccccaatgatgag 289

                                                                       
Query: 61  agctgatacgttgaaaaccatcttcagtaaaggttatttctcctgtagttctgttgatgt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agctgatacattgaaaaccatcttcagtaaaggttatttctcctgtagttctgttgatgt 229

                                                                       
Query: 121 cgttcccgtctaatccactcacccagataaacttcattccttccagtccagcccagtgtg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cgttcccgtctaatccacccacccagataaacttcattccttccagtccagcccagtgtg 169

                                                                     
Query: 181 ctgtgttcctggataccctgagaacagaagcagactccagcagcaacctccctgttga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ctgtgttcctggataccctgagaacagaagcagactccagcagcaacctccctgttga 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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