BAC Information

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BAC

Clone NameMSMg01-270E13
Chromosome5 (Build37)
Map Location 124,334,518 - 124,490,251
singlet/doubletdoublet
Overlap geneDenr, Ccdc62, Hip1r, Vps37b
Upstream geneFbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81
Downstream geneAbcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270E13.T7 (MSMg01no270_e13.b1)MSMg01-270E13.TJ (MSMg01no270_e13.g1)
ACCAG410162AG410163
length735745
length of high quality
(start - end)		318 (42 - 359)652 (75 - 726)
definitionCHROMAT_FILE: MSMg01no270_e13.b1 PHD_FILE: MSMg01no270_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:54 2005CHROMAT_FILE: MSMg01no270_e13.g1 PHD_FILE: MSMg01no270_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,334,518 - 124,334,830)(124,489,838 - 124,490,251)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CGGGGAACGATGCTTCCCCAAAACTCTTTCCCCAGCCACCGGTGGGAGTG
TGTACTGTCAGAGCTTCCCTATTCTGATGTAAGACCTTATCACAAGTGTG
GCGACTCAAGTTAGACTCTCGTGACACTGGAGGCCAGAAGGGGGAAATCT
AGGTGTCAGCCATGGTCCCACTGGCTCAAGGACAGGTTCTGGTTTTTGTC
TCTTCCAACTTCCTTGGCTTATGGCTCCATTCCTCTGTCTCCTGGCTTTC
TCTTCCATGTCTGTGTCTCTATGCCTCTGTCTCTCTCTCTTTCTGTGTGT
GTGTGTGCTTCTGTGTATGTGCCCGCGCATGTTTATGTGTATGTGTGTGT
ATTTATATGTGTGTGTGCTTATGTGTGTGCATGTGTATGTGGTATGTGTG
CTGTGTGAGTGTTGTGTATGGTGTGTTCATATTTACTATCCTTTTCTTTA
TTTTCTTCTATTTCTAATTCTCCCCTTATTTTTTCTCCCTTTATATCAAC
CTTGATTTATTTCCTTCTATTTTTCTCCTGTTTTACATTGTCCTGACCCT
TCTATCTGTTCTTTCTTCAGTAAGTCATAATCCTTTTTGACACTCCCTAA
TAATTCATACACACTCCCATTATTTTCTTCCCCTTCTGCCCCTTTTTTAG
TTCCTACCATATCCTTTTCCTTTTTTCTCAATTAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCACATGCCATTAGGAAAGAAAACA
CTAAAGAAATCTAAATAGGGCAGACAATAGAGTTAACACCATTTTACCAT
TTTGATACTGGTTGGTTATCCATGGCAAATGGACACATTATAAGATATTA
GCAAGTCAGATAGTGAGGGAGCAGATAGGCTATTCTGAATTATCTTCTAG
ATGTTTCTGTCCATCTGAAACTGCTGTAAAGAAGTAGGGCCAAGCATGGC
AGCTCATGGCTAGAATCCCAGTGCTCAGCGGGCAGAGGCGGGGGAATCAC
TTCAAATTTGAAGTCTGTATGGCTTATACAGTAAGAAATATAATACAATC
TATTCTACTCACCAGGTATGGTATCTCATGTCTGCAATTCCAGCTCAAGG
GAGGCTAAGGCAGGAGCCTGAAAATTCGAAGCCAGCCTGAGATACAGAGC
AAGACACTGTCTCAACCGGGGCTTGGCTGATGGTTCGCTGGGTGAAGGCA
GTTGATAAGCCTGATGACTTGGGAGCCCCGTGGGGGAAGGAGGCAATGCA
CTCCTCTGACATCTGTGCATGCATGTACAAATCCCCACCTCCACAGCAGA
AATAATTCAATGTAATCAAAAAAGCCAAAAAAAAAAAAAAAAAAACCAAC
CCATTAAAAATTAAGGAGGGCTGGAGAGATGGCTCAGTGGTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_e13.b1 MSMg01no270_e13.b1 CHROMAT_FILE:
MSMg01no270_e13.b1 PHD_FILE: MSMg01no270_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:54 2005
         (318 letters)



>mm_chr5_124334314_124335031
          Length = 718

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcggggaacgatgcttccccaaaactctttccccagccaccggtgggagtgtgtac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggggaacgatgcttccccaaaactctttccccagccaccggtgggagtgtgtac 264

                                                                       
Query: 65  tgtcagagcttccctattctgatgtaagaccttatcacaagtgtggcgactcaagttaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcagagcttccctattctgatgtaagaccttatcacaagtgtggcgactcaagttaga 324

                                                                       
Query: 125 ctctcgtgacactggaggccagaagggggaaatctaggtgtcagccatggtcccactggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctcgtgacactggaggccagaagggggaaatctaggtgtcagccatggtcccactggc 384

                                                                       
Query: 185 tcaaggacaggttctggtttttgtctcttccaacttccttggcttatggctccattcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaggacaggttctggtttttgtctcttccaacttccttggcttatggctccattcctc 444

                                                                       
Query: 245 tgtctcctggctttctcttccatgtctgtgtctctatgcctctgtctctctctctttctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtctcctggctttctcttccatgtctgtgtctctatgcctctgtctctctctctttctg 504

                        
Query: 305 tgtgtgtgtgtgc 317
           |||||||||||||
Sbjct: 505 tgtgtgtgtgtgc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_e13.g1 MSMg01no270_e13.g1 CHROMAT_FILE:
MSMg01no270_e13.g1 PHD_FILE: MSMg01no270_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:54 2005
         (652 letters)



>mm_chr5_124489838_124490889
          Length = 1052

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacatgccattaggaaagaaaacactaaagaaatctaaatagggcagacaatagagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 414 ttcacatgccattaggaaagaaaacactaaagaaatctaaatagggtagacaatagagtt 355

                                                                       
Query: 61  aacaccattttaccattttgatactggttggttatccatggcaaatggacacattataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aacaccattttaccattttgatactggttggttatccatggcaaatggacacattataag 295

                                                                       
Query: 121 atattagcaagtcagatagtgagggagcagataggctattctgaattatcttctagatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atattagcaagtcagatagtgagggagcagataggctattctgaattatcttctagatgt 235

                                                                       
Query: 181 ttctgtccatctgaaactgctgtaaagaagtagggccaagcatggcagctcatggctaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttctgtccatctgaaactgctgtaaagaagtagggccaagcatggcagctcatggctaga 175

                                                                       
Query: 241 atcccagtgctcagcgggcagaggcgggggaatcacttcaaatttgaagtctgtatggct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 174 atcccagtgctcagcgggcagaggcgggggaatcacttcaaatttgaagtctgtatggtt 115

                                                                       
Query: 301 tatacagtaagaaatataatacaatctattctactcaccaggtatggtatctcatgtctg 360
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tatacagcaagaaatacaatacaatctattctactcaccaggtatggtatctcatgtctg 55

                                                                 
Query: 361 caattccagctcaagggaggctaaggcaggagcctgaaaattcgaagccagcct 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  caattccagctcaagggaggctaaggcaggagcctgaaaattcgaagccagcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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