Query= MSMg01no270_f12.b1 MSMg01no270_f12.b1 CHROMAT_FILE:
MSMg01no270_f12.b1 PHD_FILE: MSMg01no270_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:58 2005
(601 letters)
>mm_chr5_126312526_126313526
Length = 1001
Score = 221 bits (114), Expect = 2e-61
Identities = 388/506 (76%), Gaps = 64/506 (12%)
Strand = Plus / Plus
Query: 41 tctccttacatcacatag-atattttctacagt-gcatataag---cacatatattttag 95
||||||||||||||| || | ||||||||| || | |||||| ||||||||||||||
Sbjct: 247 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 304
Query: 96 aatatactgaaactt-aaaaatgtaaattaaaaaaaaaaaaacaaaaacctctaccaact 154
||||||| ||||||| ||||||| |||| ||||||| | |||||||| |||
Sbjct: 305 aatatacagaaacttgaaaaatggaaatggaaaaaaata---------cctctaccgact 355
Query: 155 tcaaattaaaaaaacacatttattttagaattctctaggatactcgcaatttcctgtatt 214
| |||||||||| |||||||||||||||||||||||||||| | ||||||||| | ||
Sbjct: 356 ttgaattaaaaaa-cacatttattttagaattctctaggatagttgcaatttcccgcata 414
Query: 215 ccctactcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggag 273
|||||| |||||| ||||||| ||||||||||||| ||| |||||| |||||| |||||
Sbjct: 415 ccctacacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggag 473
Query: 274 aatataaaa-tttgtaaggaaaaaaaaagacagtttt---------gt--ct--t----- 314
|| || || ||||||| |||||||| | ||||| || || |
Sbjct: 474 aa-attaacctttgtaa---aaaaaaaatcc-gtttttccttccctgttcctgctccctg 528
Query: 315 -------------agactacttattaacaaatgcctgggccacaaactgtggcttattcc 361
|||||| |||||||||||||||| |||||||| || ||||| ||||
Sbjct: 529 aatgacgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcc 588
Query: 362 cagaataacgtatttaacacattcaaaatattttatgttttgtacatttttagttacc-c 420
|| |||| |||||||| |||||||| |||| || || || ||||| |||| |||| |
Sbjct: 589 tggactaacttatttaacccattcaaactattctaagtcttctacatggttagatacctc 648
Query: 421 -cttt-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcat 477
|||| ||| | || |||||||||||||| || |||||||||||||| || |||||||
Sbjct: 649 tctttcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcat 707
Query: 478 ctgtccctgaatctg--tttattctc 501
|| ||||||||||| |||||||||
Sbjct: 708 ctttccctgaatctccttttattctc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_f12.g1 MSMg01no270_f12.g1 CHROMAT_FILE:
MSMg01no270_f12.g1 PHD_FILE: MSMg01no270_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:58 2005
(676 letters)
>mm_chrY_1265963_1267041
Length = 1079
Score = 630 bits (326), Expect = 0.0
Identities = 599/704 (85%), Gaps = 43/704 (6%)
Strand = Plus / Plus
Query: 1 catcaaaa-aaattgtatgaagttctcaaggaattaattaatgtagttcttaatatacaa 59
|||||||| | |||||||||| |||||||||||||||| || |||||||||||||||| |
Sbjct: 191 catcaaaatatattgtatgaaattctcaaggaattaatgaaagtagttcttaatatacca 250
Query: 60 tgtctttactgaacataaacagaccacttatatt-tcaatctcctaaatagcaactc--a 116
||||| ||||||||||| |||||||||||||||| || |||||||||||| |||||| |
Sbjct: 251 tgtctgtactgaacatatacagaccacttatattgtc-atctcctaaataacaactccta 309
Query: 117 ttttatagcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaag 176
||||||| || |||| ||||||| |||||||| |||||||||| |||||||||||||
Sbjct: 310 ---tatagcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaataaag 366
Query: 177 aaggatcaggggatatggcccagag--acaatgcc-atgtgtgtgttcaaacattcacct 233
|||||||||| | ||||||||| | | || ||| || ||| || ||| ||||||||||
Sbjct: 367 aaggatcaggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacct 423
Query: 234 acaacaccagtgcttatgattttgggaggggcagagataggaagatgactgtggcttcct 293
| |||| ||||||| | || | |||||||||||||| || |||| ||||||||||||||
Sbjct: 424 ataacaacagtgctcagga--tggggaggggcagagacagaaagaagactgtggcttcct 481
Query: 294 gaaagccagc------------tcagcaagaaacccagtcacaaggggataagttatgta 341
|||||| ||| |||||||||||||| |||| ||||| | || ||| |
Sbjct: 482 gaaagcaagcctcactcctaggtcagcaagaaaccctgtcataagggaacaaatta-g-- 538
Query: 342 gga---aaagagtagatcacactatacccttccctagcctctgaacttacctgtacagtt 398
||| || ||| ||| |||||| |||| |||||| ||||||||| |||||||||||| |
Sbjct: 539 ggagtgaaggagcagaacacactgtacctttccctggcctctgaatttacctgtacaggt 598
Query: 399 ctctatgcagactcacataaatatgattaaaatatgcaagaggttattttgcatagctta 458
|| |||||| || |||||||||||||||||| ||| |||||||||| ||||||||| |||
Sbjct: 599 ctgtatgcacacacacataaatatgattaaagtatacaagaggttactttgcatagatta 658
Query: 459 tat-tcaaaagcaatgttgttttagactagaaacctgaggac-tttatatcattatagtt 516
||| | ||||||||||||||||||| ||||| |||||||||| |||||||||||| | |
Sbjct: 659 tatgt-aaaagcaatgttgttttagcctagagacctgaggacttttatatcattaggggt 717
Query: 517 tctggagcaaactcccaagatatagatg---atgggtatatcttcttactgtgcaaagga 573
||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||
Sbjct: 718 cctggagcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaagga 776
Query: 574 aacctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctctatgttcct-t 632
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 777 aacctcagttaagtgtgtgtgtcagtgactccaaacagctttcctcctctaaattcctat 836
Query: 633 tatatagcatagaatgatctgtaaataatgaaaatatgaaaaca 676
| ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 837 t-tatagcacagaatgatctgtaaataatgaaactatgaaaaca 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1079
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1069
Effective search space: 711954
Effective search space used: 711954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
