BAC Information

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BAC

Clone NameMSMg01-270I22
Chromosome5 (Build37)
Map Location 128,674,789 - 128,832,815
singlet/doubletdoublet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270I22.T7 (MSMg01no270_i22.b1)MSMg01-270I22.TJ (MSMg01no270_i22.g1)
ACCAG410360AG410361
length732757
length of high quality
(start - end)		323 (41 - 363)684 (68 - 751)
definitionCHROMAT_FILE: MSMg01no270_i22.b1 PHD_FILE: MSMg01no270_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:14 2005CHROMAT_FILE: MSMg01no270_i22.g1 PHD_FILE: MSMg01no270_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,674,789 - 128,675,107)(128,832,132 - 128,832,815)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACATGTAATATTCATGCTCACATTAGAATTTCAGATATGGCAGGGGGTTT
ATGAGGGGCAGGTATCTTGGCTGAGTCACTCCCTGAAGATTTCAAAACAC
CCCAAATATGGTCCTATTGGTCATCACAGGTCACTTCCCATATGGGCTTT
GGACCACCTGCGGGGCTCAGACAATTGTAGATATTTCTGGACTCCAAATT
GAGGTTTGTGTTCTGATGTGCTTTATTGAGGGTGGAGGGTGGGCCTATTC
AAATATGAGCTTTGAAAAATGCCATTAGAATCAGACATGAAATTCAATCC
AAAGTATTGAATGTTTTATATACCCCCCCACAGAACTTAGCCACCTCCCC
CTGGCATATTACGGCGAAAGAGGTCCGTAAAATAAGACCACACAAGCATA
CAAACCTGAGTTTGGATCTCCAACACTCATGTGAAAAGACACTCATGGTG
CTAACTGTCTGGAACCCCAGCACTGGGGAGGCAGATAGGAGGATTCCAAG
TGTATGCTGGCCAACCAGGCTAACCCACTCTGTGAGCTTCAGATCCAAAG
AGAANAGATAAGATGAAGGATGGAAGGACACACCCAATGCTAATCTATCG
CCTTTGTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATT
TCCAATGGTATACCANAAGTCCCCCATACCAN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCTCAGGATCCCCATAACTTTTGCACAGGCCT
GAAAGCCATAATTGGGTCGTATCTGGGACAGGAAGGGAGGACATTAGTGG
CTTTGGCTCCTGTTTTCTCCCTCACCTGCTCAGTGAATGCGAGGGGTATG
TTGAGCATACTTCTATAGATTGTCTCACTCTAAAGATGACTGCTAGAATA
TTTGCTTTATAAATCGATTTTTTTTCTGTTCAGCCATGTTCCCAAGTGTC
AGTGACTAAAAACCCCAAAGCTGGGTTGAAATGGGGAGATTCGTTTGGTA
ATTAGATTTTGAGACATTGTAACCCTAGTTCTTGGAAATGTGTGCGGGAG
CCCAGATCTGTGACTGTGGTGGTTCCTTCCCAGGCATAGATCGGGGCTGG
GGGGCGGGGATCTAAATTAAAAATGTTCCTTTTGTATTCTAAAGTGGGAA
GAGTTCAAGGCAGTGACAGTTTTTAAGTCATTGAAAATGCGCCACCCCTC
CTCCTTGTCAGTGACTCAGAATAAATGATTTCTTTCTCTCTGCCACTTGG
TTCTGGAATCAATGTTTAATCTTCGAGGAGATAAAGCAGATCCCATCACT
GTATAGGCTGTCCTGGGCAGATATACATTAAAAGTCCCCCTGAAGACCCG
AGGTCTCTTTCCAGGACTCATAGCCTCTTTTTATTTCTGATCAATCTGTT
TTCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_i22.b1 MSMg01no270_i22.b1 CHROMAT_FILE:
MSMg01no270_i22.b1 PHD_FILE: MSMg01no270_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:14 2005
         (323 letters)



>mm_chr5_128674585_128675307
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatgtaatattcatgctcacattagaatttcagatatggcagggggtttatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatgtaatattcatgctcacattagaatttcagatatggcagggggtttatga 264

                                                                       
Query: 65  ggggcaggtatcttggctgagtcactccctgaagatttcaaaacaccccaaatatggtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggcaggtatcttggctgagtcactccctgaagatttcaaaacaccccaaatatggtcc 324

                                                                       
Query: 125 tattggtcatcacaggtcacttcccatatgggctttggaccacctgcggggctcagacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattggtcatcacaggtcacttcccatatgggctttggaccacctgcggggctcagacaa 384

                                                                       
Query: 185 ttgtagatatttctggactccaaattgaggtttgtgttctgatgtgctttattgagggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtagatatttctggactccaaattgaggtttgtgttctgatgtgctttattgagggtg 444

                                                                       
Query: 245 gagggtgggcctattcaaatatgagctttgaaaaatgccattagaatcagacatgaaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagggtgggcctattcaaatatgagctttgaaaaatgccattagaatcagacatgaaatt 504

                              
Query: 305 caatccaaagtattgaatg 323
           |||||||||||||||||||
Sbjct: 505 caatccaaagtattgaatg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_i22.g1 MSMg01no270_i22.g1 CHROMAT_FILE:
MSMg01no270_i22.g1 PHD_FILE: MSMg01no270_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:14 2005
         (684 letters)



>mm_chr5_128831932_128833015
          Length = 1084

 Score = 1292 bits (668), Expect = 0.0
 Identities = 680/684 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcaggatccccataacttttgcacaggcctgaaagccataattgggtcgtatctggg 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 884 atctcaggatccccataacttttgcacaggcctgaaagccataaatgggttgtatctggg 825

                                                                       
Query: 61  acaggaagggaggacattagtggctttggctcctgttttctccctcacctgctcagtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 acaggaagggaggacattagtggctttggctcctgttttctccctcacctgctcagtgaa 765

                                                                       
Query: 121 tgcgaggggtatgttgagcatacttctatagattgtctcactctaaagatgactgctaga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgcgaggggtatgttgagcacacttctatagattgtctcactctaaagatgactgctaga 705

                                                                       
Query: 181 atatttgctttataaatcgattttttttctgttcagccatgttcccaagtgtcagtgact 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atatttgctttacaaatcgattttttttctgttcagccatgttcccaagtgtcagtgact 645

                                                                       
Query: 241 aaaaaccccaaagctgggttgaaatggggagattcgtttggtaattagattttgagacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaaaaccccaaagctgggttgaaatggggagattcgtttggtaattagattttgagacat 585

                                                                       
Query: 301 tgtaaccctagttcttggaaatgtgtgcgggagcccagatctgtgactgtggtggttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgtaaccctagttcttggaaatgtgtgcgggagcccagatctgtgactgtggtggttcct 525

                                                                       
Query: 361 tcccaggcatagatcggggctggggggcggggatctaaattaaaaatgttccttttgtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcccaggcatagatcggggctggggggcggggatctaaattaaaaatgttccttttgtat 465

                                                                       
Query: 421 tctaaagtgggaagagttcaaggcagtgacagtttttaagtcattgaaaatgcgccaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctaaagtgggaagagttcaaggcagtgacagtttttaagtcattgaaaatgcgccaccc 405

                                                                       
Query: 481 ctcctccttgtcagtgactcagaataaatgatttctttctctctgccacttggttctgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctcctccttgtcagtgactcagaataaatgatttctttctctctgccacttggttctgga 345

                                                                       
Query: 541 atcaatgtttaatcttcgaggagataaagcagatcccatcactgtataggctgtcctggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atcaatgtttaatcttcgaggagataaagcagatcccatcactgtataggctgtcctggg 285

                                                                       
Query: 601 cagatatacattaaaagtccccctgaagacccgaggtctctttccaggactcatagcctc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cagatatacattaaaagtccccctgaagacccgaggtctctttccaggactcatagcctc 225

                                   
Query: 661 tttttatttctgatcaatctgttt 684
           ||||||||||||||||||||||||
Sbjct: 224 tttttatttctgatcaatctgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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