BAC Information

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BAC

Clone NameMSMg01-272F16
Chromosome5 (Build37)
Map Location 55,951,048 - 55,951,336
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F16.T7 (MSMg01no272_f16.b1)MSMg01-272F16.TJ (MSMg01no272_f16.g1)
ACCAG411662AG411663
length759760
length of high quality
(start - end)
303 (66 - 368)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no272_f16.b1 PHD_FILE: MSMg01no272_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:29 2005CHROMAT_FILE: MSMg01no272_f16.g1 PHD_FILE: MSMg01no272_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTATTCCTGAGACCCATTTTTAATGGGGTTATTTGATTTTCTGGGGTC
TTGCTTCTAGAGCTATCTTATATATTGGGTATTAGTCCGCTATCTGATTT
AGGATAGATAAAGATCCTTTCCCAAACTGTTGGTGTCCTTTTTATCTTAT
TGACTGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCAT
TTGTCCCTATTGCTGTTCTATTCAGCAATTTTTCCCCTGTGCACATATCT
TCCAGGCTTTTCCCAACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTA
TATGTGTTGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATA
GGAATGGATCAATTCGCATTCTTCTTACATGATAACCACCAGTTGTGCTT
GCACCATTTGTTGAAAATGCTGTTTTTTTTTCCCCCCACTGGAAGGTTTT
AGCTCCCTTGTCAAAGAGCAAGTGACCATAGGTGTGTGGGTTCATTTCTG
GGTCTTTAATTCTATTCCATTGGTCTACCTGTCTGTTGCTATACCAGTAC
CATGCAGTTTATATTAAAAATGATTTATAATAAAATTTTGAGATCCATTA
CCCTTGGTGAACATCATAAAATTCTGAACTCAGTTGTAATTTATTTGACT
CATTGACTATATTATATAGTTCATTTTTCTATGACTTTTTAATTTACTTA
TCCCCATTA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTGGGAGATCACTTTCCTAAAATACATAAAGC
CTCAAGTTTAATTTTGTATATTGAGTGTATAAACATACACATATAAATAC
ACATATATGTTTATAATACAGACAAACACACAAATGAACACACACAGACA
CAGAAACAAACATGAACACATGAAGAACCAACATAATAATGGTGAAAAGA
GATAAATAATGCCATGGTAAGTAAAGAGAGTGGTTTATTGAATAATGCGA
TTTATTTGATAAAGAAGTGAAATAAGAACAGAAAGCTATAAAGCAACTGA
TAGACCTATTTTTTTTCACACCACCCACCCAAGATAGCGGGCTATAAGAA
AAAAGAAATATTACTATTGTCTTTGAAAAGAAACTGAAGTTTATGACCTC
GTTTTGAACAGAAGGAATTAAAAGGACATTTACAATGACTTAAGTCGGAA
GAGACTGAATTTGGGATGTGTTTTATCTTATTTACTATTTAAGAACAACA
GCTGAATTCAGATAATTCTGCTTTTATTTCATATGAAAAGCAAGTTCTCA
AAATGGAATGCTTCTAAATGCACATGATGATACACATCAAATACTTATGT
CTGTTTCTTCCTTTTCTGTAAGAAATCTAATTTATCATATGTATGTATGT
ATGTATGTATGTATGCAAATATATATATAGATAGTAAACATTTAGAGACA
TATAGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f16.g1 MSMg01no272_f16.g1 CHROMAT_FILE:
MSMg01no272_f16.g1 PHD_FILE: MSMg01no272_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:29 2005
         (289 letters)



>mm_chr5_55950695_55951383
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgggagatcactttcctaaaatacataaagcctcaagtttaattttgtatattgagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agtgggagatcactttcctaaaatacataaagcctcaagtttaattttgtatattgagtg 583

                                                                       
Query: 61  tataaacatacacatataaatacacatatatgtttataatacagacaaacacacaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tataaacatacacatataaatacacatatatgtttataatacagacaaacacacaaatga 523

                                                                       
Query: 121 acacacacagacacagaaacaaacatgaacacatgaagaaccaacataataatggtgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acacacacagacacagaaacaaacatgaacacatgaagaaccaacataataatggtgaaa 463

                                                                       
Query: 181 agagataaataatgccatggtaagtaaagagagtggtttattgaataatgcgatttattt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 462 agagataaataatgccatggtaagtaaagagattggtttattgaataatgcgatttattt 403

                                                            
Query: 241 gataaagaagtgaaataagaacagaaagctataaagcaactgatagacc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gataaagaagtgaaataagaacagaaagctataaagcaactgatagacc 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)