This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
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Search Result
BAC
Clone Name
MSMg01-272J05
Chromosome
5 (Build37)
Map Location
69,268,336 - 69,268,971
singlet/doublet
singlet
Overlap gene
none
Upstream gene
EG330097
,
EG666977
,
AY616753
Downstream gene
LOC666996
,
Kctd8
,
LOC545756
,
Yipf7
,
Guf1
,
Gnpda2
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG330097
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:330097
MGI:3645064
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
name
EG666977
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666977
MGI:3647963
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 222 ESTs, 3 Proteins
pseudo
: _no_value
name
AY616753
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:433899
MGI:3577767
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666996
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666996
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 Proteins
pseudo
: _no_value
name
Kctd8
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:243043
MGI:2443804
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC545756
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:545756
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 66 ESTs, 12 Proteins
pseudo
: _no_value
name
Yipf7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75581
MGI:1922831
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Guf1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:231279
MGI:2140726
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gnpda2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67980
MGI:1915230
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
AY616753
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:65301144
GeneID:433899
MGI:3577767
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cDNA sequence, AY616753
transcript_id
: NM_001018019.1
name
Kctd8
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:65301476
GeneID:243043
MGI:2443804
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: potassium channel tetramerisation domain containing 8
transcript_id
: NM_175519.4
name
Yipf7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130606
GeneID:75581
MGI:1922831
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Yip1 domain family, member 7
transcript_id
: NM_023784.4
name
Guf1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:91064874
GeneID:231279
MGI:2140726
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: GUF1 GTPase homolog (S. cerevisiae)
transcript_id
: NM_172711.2
name
Gnpda2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:83999998
GeneID:67980
MGI:1915230
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: glucosamine-6-phosphate deaminase 2
transcript_id
: NM_001038015.1
name
AY616753
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:65301145
CCDS:CCDS19319.1
GeneID:433899
MGI:3577767
definition
GO_function
: GO:0009055 - electron carrier activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]
GO_process
: GO:0045454 - cell redox homeostasis [Evidence IEA]
codon_start
: 1
product
: glutaredoxin cysteine-rich 1 protein
protein_id
: NP_001018019.1
name
Kctd8
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:65301477
CCDS:CCDS19320.1
GeneID:243043
MGI:2443804
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA]
GO_function
: GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA]
GO_process
: GO:0006813 - potassium ion transport [Evidence IEA]
codon_start
: 1
product
: potassium channel tetramerisation domain containing 8
protein_id
: NP_780728.3
name
Yipf7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12963821
CCDS:CCDS19321.1
GeneID:75581
MGI:1922831
definition
codon_start
: 1
product
: Yip1 domain family, member 7
protein_id
: NP_076273.1
name
Guf1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370038
CCDS:CCDS19322.1
GeneID:231279
MGI:2140726
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA]
GO_process
: GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006413 - translational initiation [Evidence IEA]
codon_start
: 1
product
: GUF1 GTPase homolog
protein_id
: NP_766299.1
name
Gnpda2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83999999
CCDS:CCDS19324.1
GeneID:67980
MGI:1915230
definition
EC_number
: 5.3.1.10
GO_function
: GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA] [Evidence ISS]; GO:0016853 - isomerase activity [Evidence IEA]
GO_process
: GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006044 - N-acetylglucosamine metabolism [Evidence IEA]
codon_start
: 1
note
: oscillin; glucosamine-6-phosphate isomerase
product
: glucosamine-6-phosphate deaminase 2
protein_id
: NP_001033104.1
name
LOC666996
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666996
definition
number
: 4
pseudo
: _no_value
name
LOC666996
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666996
definition
number
: 3
pseudo
: _no_value
name
LOC666996
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666996
definition
number
: 2
pseudo
: _no_value
name
LOC666996
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666996
definition
number
: 1
pseudo
: _no_value
name
EG330097
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:94374794
GeneID:330097
MGI:3645064
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG330097
transcript_id
: XR_002346.1
name
EG666977
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149253948
GeneID:666977
MGI:3647963
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 222 ESTs, 3 Proteins
product
: predicted gene, EG666977
pseudo
: _no_value
transcript_id
: XR_033876.1
name
LOC545756
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149253949
GeneID:545756
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 66 ESTs, 12 Proteins
product
: similar to UMP-CMP kinase
pseudo
: _no_value
transcript_id
: XR_033911.1
clone name
MSMg01-535A15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-192E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497C22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-502N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-421L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-275A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-089B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-073D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-174O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-169M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336C12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-153A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-527M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-051G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-462O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-468B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-137O03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-193L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-215G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-500E16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-409I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-456L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-297D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-288A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-511F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379A04
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-383J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-339D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-316P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480F02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-092L11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-200K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228B08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-178N08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-237O22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-027K20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-109G18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-315D03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-312G12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-072G03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-095F15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091D08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-165N16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-342C15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-054B09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-313G23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-245O10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-146C07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191O23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-241K03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-098J05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-152G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021N05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-322D05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-172K21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-330D02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228D19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-086L03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-127N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-138H16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-228O11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-251L06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-288P07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-298O07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-103K18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-026J15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-207D20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-162C04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-137K11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-304K17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-279F19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-092G13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-092G11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-014O21
singlet/doublet
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clone name
B6Ng01-189E24
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doublet
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unique
clone name
B6Ng01-042A04
singlet/doublet
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clone name
B6Ng01-257G05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332B05
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plural/unique
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B6Ng01-130B09
singlet/doublet
doublet
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clone name
B6Ng01-190E12
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clone name
B6Ng01-016P16
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doublet
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B6Ng01-116B05
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clone name
B6Ng01-040F13
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unique
clone name
B6Ng01-156C12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-138G03
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doublet
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clone name
B6Ng01-004P23
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doublet
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B6Ng01-093M17
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doublet
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unique
clone name
B6Ng01-094A16
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doublet
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clone name
B6Ng01-071H11
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doublet
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B6Ng01-108G08
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doublet
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unique
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B6Ng01-128M18
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doublet
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B6Ng01-249F12
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doublet
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clone name
B6Ng01-348C09
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doublet
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clone name
B6Ng01-091C02
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B6Ng01-336L10
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B6Ng01-321A07
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B6Ng01-245K13
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B6Ng01-240K21
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B6Ng01-001D20
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B6Ng01-147C04
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B6Ng01-232I01
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B6Ng01-214L04
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B6Ng01-281L15
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B6Ng01-138O02
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B6Ng01-100O08
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B6Ng01-204E22
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doublet
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B6Ng01-036J07
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doublet
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B6Ng01-195H03
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doublet
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B6Ng01-164F03
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B6Ng01-003B19
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B6Ng01-060F01
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B6Ng01-052J10
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B6Ng01-266N16
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B6Ng01-062E21
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B6Ng01-333M07
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B6Ng01-306H01
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B6Ng01-255G11
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B6Ng01-035O09
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B6Ng01-286F22
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B6Ng01-233H24
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B6Ng01-224D01
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B6Ng01-330M11
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B6Ng01-207B08
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B6Ng01-205G05
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B6Ng01-209N20
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clone name
B6Ng01-346D23
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