BAC Information

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BAC

Clone NameMSMg01-274A12
Chromosome5 (Build37)
Map Location 148,756,055 - 148,756,334
singlet/doubletsinglet
Overlap genenone
Upstream geneGtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneC130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A12.T7 (MSMg01no274_a12.b1)MSMg01-274A12.TJ (MSMg01no274_a12.g1)
ACCAG412877AG412878
length738737
length of high quality
(start - end)
---282 (72 - 353)
definitionCHROMAT_FILE: MSMg01no274_a12.b1 PHD_FILE: MSMg01no274_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:31 2005CHROMAT_FILE: MSMg01no274_a12.g1 PHD_FILE: MSMg01no274_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCTGTATTCAAAACCCTCACNGAAAAGCAAAAAGCATTTCAAGGATGAT
AATCTTTATATGTCACCCGTAATAACTGTGACGGCTGCATATTCTTCCCT
AAAAAACCTGCTATGATTACCTGCTACTTGTAAAAAGCACGTTGATGAGA
TAGATAACCATGACCTCGACATAATACAGGTAATGACTGATTCCCTATTA
ACTGAAGTAATGTTTGCGCTGATCTGTTCAGACACCGTGACTGATGTCTT
CCTATGCCCATATGTATTTCTATAGCTATATCTATGCCTATTGCTATATG
TATCTTTTTTTCTCACCCCCCCCCTCTACGTATTCCTATCCCTATACCTA
TACCTGCTTGTATATCTATAAAAATATCTATCCCGACCTTTATATCCATT
TATATATCTATATCTAGTGCTGTATCGATATCTTGTACCTATCCATGTGC
CTATCCCTAAATCTCTCTTCATACCGACACCTATCTCTATATCTATGTCT
ATATCTATATCTACTTGCTATCTATATACTTCTTTTGTGATTATATCGCX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGGAAACAGAGGAAGGAGTACACTAGT
CAAAGAAAGGAGTTGCCCGTGGGGGTCCTCTCAGGAAAGACTCACACCAT
GGGATGTTTATATAGCTATGCCAAGCAAACCTTACTGGAAGGTAGGATGA
ATTATTCATAAGCGAAGAAGGGAGCAGGTCCTTACAGGACTAGCCTTGAG
GCGTCGTTGGTCGGAACTACATTCTAGTGCGTACAGCCTAATTTTGCAAG
TCCCTTGCTCCTTGTCCCAATTTCCCCTCTATTTAAACCTAAAGTTCAAG
TTAGAGTCCCATCCGAGAGCAGGAGCCGGGGGTATCCACTGAACTCTTTT
GTGTATTACNCCGAACACCTAGGAAGAACTGAATGGGTGGGTTTCTTTGT
CACTCCTCGCCCCTTTAATTGGTATGCTGACATGCATGGCGGAGATGACC
TTGTGAGAGCTGGTGGAGCTAGTATGGAAAATGTGTTCTCTCTATTCAGA
TACACATCTGTTCTAGAGAACAGCGACAGGCCGCTCCCGTGGGTCTCTGC
ATCCCTGAGTCGTCATACCTCGGGACACCTTGAAGAAAACCATGCTTGGT
TTCCTGCGGACCTTCCGTGAACGCTCTTGAAAACGCTCATCGGTGGTGCA
TCCAGTCCTAGGAAGAGTCTTAAGCGGACTGGACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a12.g1 MSMg01no274_a12.g1 CHROMAT_FILE:
MSMg01no274_a12.g1 PHD_FILE: MSMg01no274_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:31 2005
         (282 letters)



>mm_chr5_148755855_148756536
          Length = 682

 Score =  435 bits (225), Expect = e-126
 Identities = 267/281 (95%), Gaps = 2/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaaacagaggaaggagtacactagtcaaagaaaggagttgcccgtgggggtcctct 60
           ||||||||||||||||||| |||||||| |||||||||||||||   ||| |||||||||
Sbjct: 480 agaggaaacagaggaaggaatacactaggcaaagaaaggagttgggggtgagggtcctct 421

                                                                       
Query: 61  c-aggaaagactcacaccatgggatgtttatatagctatgccaagcaaaccttactggaa 119
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 caagg-aagactcacaccatgggatgtttatatagctatgccaagcaaaccttactggaa 362

                                                                       
Query: 120 ggtaggatgaattattcataagcgaagaagggagcaggtccttacaggactagccttgag 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 ggtaggatgaattattcataagcgaagaaggaagcaggtccttacaggactagccttgag 302

                                                                       
Query: 180 gcgtcgttggtcggaactacattctagtgcgtacagcctaattttgcaagtcccttgctc 239
           ||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 301 gcgtcgttggttggaattacactctagtgagtacagcctaattttgcaagtcccttgctc 242

                                                    
Query: 240 cttgtcccaatttcccctctatttaaacctaaagttcaagt 280
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttgccccaatttcccctctatttaaacctaaagttcaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)