BAC Information

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BAC

Clone NameMSMg01-274B19
Chromosome5 (Build37)
Map Location 112,850,542 - 112,850,735
singlet/doubletsinglet
Overlap geneSez6l
Upstream geneMn1, A230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2
Downstream geneEG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B19.T7 (MSMg01no274_b19.b1)MSMg01-274B19.TJ (MSMg01no274_b19.g1)
ACCAG412932AG412933
length735735
length of high quality
(start - end)
194 (124 - 317)239 (122 - 360)
definitionCHROMAT_FILE: MSMg01no274_b19.b1 PHD_FILE: MSMg01no274_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:36 2005CHROMAT_FILE: MSMg01no274_b19.g1 PHD_FILE: MSMg01no274_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGCTGGGCGGAATTC
TGGGAAATTTCCCGAAGAATTCGGAAGGCCACAGGAAGGAGAAGATGGGG
TAAAGACCTTTTAGTGGAACCCTTTAAATTGGAATTTTTTAATCAGAAAA
GAGGACACAGACTTTGTTTTGGAGGGGAAATATGGGCTTTAAGTACTCAG
GCTAAATTCCACTCCAAGGCAACTCTGCAAGACACACTCCAACAACTCTG
GGGCTTCCGTTTGTACCGAGTGTGCTGTGGTGTGTTGCCGAAGACCATGC
AGGATGGGTGCGGCTCATGTTTGTTTCTGCTGATCCAACTTGACCTGCAG
TTTGCCACTCTGCCTGCCTTGGGAACGGAGGCCGTCGTGCGACCTTGGCT
GCAGCCTCAATGTACCGAACTCACCGGTGTCAAAGCCTTCAATTTTAAAT
ATAGTTAAGTACAGCGAAGAAACAGTGTAGCGGAAAGATGGCGGCCACGC
TGGGCTGCGACCCAACGCCACAGGGTCTCGGATGAATGTCTGAGGAGGTC
CCGACAGTTCATGTCTGTCTGTCTGTCTGTCTGTCTGAAGTCCCTCTTTC
CAGGGCAGTTCTTGTTAGATGGAAACTTCGTACTCTCTTGTTTCCTGTAG
GACAGAGCAAAAGAGATGGGTTAAGCCCTGGGTGGTAGAGTGACATCCCA
AGGCTTCCACAGTGTCATACCTCACTGTGTCCCTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACACGAGGCAGGGAAACCCTAAAGCAGGCTT
TGCTCTTGGAATTTAAACAGGGGAACAGGAGCCAGCAGAAGGAAGAGAAA
GAGAGGCTCACCTGGTGGACCTCATCTCAAAGATATAGATTGTGATGGTG
TGAATATGCTTGGCCCAGGGTGTGGCAATATTAGGAGGTGTGGCCTTGCT
AGAGTGGGAGTGGCCTCATTGGAGTGGGTGTGGCCTTGTTGGAGGAGGTG
TGGCTCTGCTGGAGTAGGTGTGTCACTGTGGGCGTGGGCTTTAAGATCCT
TCTCCTATTTTTTTTGGAACTCCCCCCTCTGCTAGCAACCTTCAGATAAA
GATGTAGAACTCTCAGCTTCTCCTGAAACATGCCTGCCTGGATGCTGCCA
TACTCCCACCTTGATGATAATGGACTAAACCTCTGAGCCTGTAAGCCAGC
CCCAGTTAAATGTTGTCCTTCTAAGAGTTGCCTGGGTCATGGTGTCTGCT
CACAGCAGTAAAACCCTAACCAAGACTAGATAGTTGTCCTTCCTGTGCCC
TGGATCTCAGGAGTTGCCTAGATGAACAGGAGTGAAGAATCAGCTGACTG
AATCATTCACTGTCCTTCATTATAGATGGAGAGTAGCCTTTTCATAAAGG
ACTGCTCAGTCCCCATGTAGCTTCTCACTGGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b19.b1 MSMg01no274_b19.b1 CHROMAT_FILE:
MSMg01no274_b19.b1 PHD_FILE: MSMg01no274_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:36 2005
         (194 letters)



>mm_chr5_112850342_112850935
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaattggaattttttaatcagaaaagaggacacagactttgttttggaggggaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaattggaattttttaatcagaaaagaggacacagactttgttttggaggggaaatat 260

                                                                       
Query: 61  gggctttaagtactcaggctaaattccactccaaggcaactctgcaagacacactccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctttaagtactcaggctaaattccactccaaggcaactctgcaagacacactccaac 320

                                                                       
Query: 121 aactctggggcttccgtttgtaccgagtgtgctgtggtgtgttgccgaagaccatgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactctggggcttccgtttgtaccgagtgtgctgtggtgtgttgccgaagaccatgcagg 380

                         
Query: 181 atgggtgcggctca 194
           | ||||||||||||
Sbjct: 381 acgggtgcggctca 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)