BAC Information

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BAC

Clone NameMSMg01-274F04
Chromosome5 (Build37)
Map Location 84,072,395 - 84,072,686
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274F04.T7 (MSMg01no274_f04.b1)MSMg01-274F04.TJ (MSMg01no274_f04.g1)
ACCAG413087AG413088
length734734
length of high quality
(start - end)
291 (68 - 358)293 (69 - 361)
definitionCHROMAT_FILE: MSMg01no274_f04.b1 PHD_FILE: MSMg01no274_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:50 2005CHROMAT_FILE: MSMg01no274_f04.g1 PHD_FILE: MSMg01no274_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCT
TTGTTCTTTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGTTTTCTCTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTGTGAGGTC
CCATTTGTCAACTCTTGATCTTAGAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTATCCTCTGTTCCCTTATCTTTGAGGCTTTTCCCCACTTTCTCC
TCTATACTTTTCTGNGCCTCTGNACCANGCGCAGTTCCTTGATCCACTTA
CATTTGATCTTACTACAAGGAGAAAAAAAAAGATTGATTTGCGTGCTTCT
ACATGATAACAACCAGTTGTGCCATCATCAATTGTCGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAATATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTG
TCTGTCTCTATACCCGTACTATGCTCTTTCTATCACAATTGCTCCGTACT
ATAGCTTTACGTCCTGCTTGCTGACTCCACCCGAGGCTCTTCCATCCTTG
ATTAGAGTTTTTGCTTTCCTATTCTTTTTTGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAATGGTTTATTCAAACTTCTCAGGTGTTAC
TTATTTGATTACAATGGCCTTTAGAAGAAAACTCATAGGAAATAAATAAT
CTATCAAGAAAGCATATTTAATGAGGGCTTATGGCACATCAGGATTTATG
TTAGGGGATTTGCATGCACAATCTCATTTTGATTTTATTTTGCTCCATGG
ATTGTTTATTAATATTTCTTGCATAAAGGCCCCTAAGAGTTTAGTGACTT
TGTTAAACTTTCTATTTTAAAGTTATTGGGATTGAATCAAAAATTCCATA
TAAATCCATATTTAATGCTCCCCCCCCCCCTCCGAAAGTTCTGGGCCAAA
CACAAATTAAGGAATATAACTCATTTATACAATAAATTACTGACAGAGCC
GTTTGTGCCAACTGAATACATTCTTTACATTTTTTCCAACTTCTACCACC
ATCACCTATATTATACTACCTGTAAACTATTATAAGAGACTATTAAACAC
ACTTGGCTAACAACTTCACTCCTTCACATCAGCTAAAATATCAACTTTAT
AGCTTATATTTGTTTATTAGATCTATCTCTAATAAACAAATAAAATAGTC
TCTATCTCTGCTTTTTGTCTCTTTCTCTGTCTCTATTTCCCCCCTTCAGT
GTGTATGTGTGTATGTACCTGCGTGCATCCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_f04.g1 MSMg01no274_f04.g1 CHROMAT_FILE:
MSMg01no274_f04.g1 PHD_FILE: MSMg01no274_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:50 2005
         (293 letters)



>mm_chr5_84072195_84072887
          Length = 693

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatggtttattcaaacttctcaggtgttacttatttgattacaatggcctttagaaga 60
           |||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||
Sbjct: 201 aaaatggtttcttcaaacttctcaggtgttacgtatttgattacaatgggttttagaaga 260

                                                                       
Query: 61  aaactcataggaaataaataatctatcaagaaagcatatttaatgagggcttatggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactcataggaaataaataatctatcaagaaagcatatttaatgagggcttatggcaca 320

                                                                       
Query: 121 tcaggatttatgttaggggatttgcatgcacaatctcattttgattttattttgctccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggatttatgttaggggatttgcatgcacaatctcattttgattttattttgctccat 380

                                                                       
Query: 181 ggattgtttattaatatttcttgcataaaggcccctaagagtttagtgactttgttaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggattgtttattaatatttcttgcataaaggcccctaagagtttagtgactttgttaaac 440

                                                               
Query: 241 tttctattttaaagttattgggattgaatcaaaaattccatataaatccata 292
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tttctattttaaagttattgggattgaatcacaaattccatataaatccata 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)