BAC Information

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BAC

Clone NameMSMg01-275D23
Chromosome5 (Build37)
Map Location 147,258,932 - 147,259,599
singlet/doubletsinglet
Overlap geneWasf3
Upstream geneLOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8
Downstream geneLOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275D23.T7 (MSMg01no275_d23.b1)MSMg01-275D23.TJ (MSMg01no275_d23.g1)
ACCAG413753AG413754
length754748
length of high quality
(start - end)
177 (127 - 303)672 (77 - 748)
definitionCHROMAT_FILE: MSMg01no275_d23.b1 PHD_FILE: MSMg01no275_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:57 2005CHROMAT_FILE: MSMg01no275_d23.g1 PHD_FILE: MSMg01no275_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGTGTCTTACGAGGATGCTGGTGACATTAACATCTCTGTACTC
CAGGGAACCTCTGCGGTCTTTCTGCCACATCGGTGCCAAGCAGCCCTTGG
AAATGAATGTGATATTGTGATATCAGCTTGTAGATTTCTGCTCACACTAG
TTACCATTTGCAGGGTGTTGTTAATTCATCAACCTCAGCTGAACTCCAGC
TGCCGTGAGCTCTGAGCCACTGTCACCCGATGTCTGATGTCCCTCAGATA
GATGCACTGGTNGAAAAAAAAATCTTTTGACACTGTAGAGTCTAGTCTTT
TTCCATTCCCGCTGTCTGGAAGTAGCTGGGCGTTCTATGGATATTTCATN
NAAAATCTTCTGTCCATCCACACCTGACTTCCCTAGTCCTGAGATGGCAT
ACACGTGAGAGCACTCGTGGTCGGTAGACNNNNCATGGAGACTCCTTATG
AATTTTTTTTTTGTGGTGGGGGCCAAAACGGGCCGCNNNNTTCCAAATAA
ATAAACACTGGNNNNNNNNNNGATCTAGATTTGTAACATTTTAACAAACC
TTTCACGCCGCCCCTGTGGTGNNANNAATCTACACNNNTCAAAAATAAAC
AAAGAGAGATTTTNTNNTTTTTTTACCCTTAAGAAAAAACCTTTTCCCAG
NNTTCAACAAGAGATGTCCTGCGTANNNNNNNNNNNNNNNNNNNTCCTCT
ACTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGCCTTTTGAAGGCTATATTCA
ATTTCATTATCCCTTTTTCTGTTGCAGAAGTGACTTGCTTTTACCTATAA
GCCATATTGAATAATGCTTCTGTGAGCGTGCGTGTGCAAATACCTATTTC
TGTTTTTTAAAATGTATTTATTTTATGTCCATGACTGTTTTGTGTACGTG
TGTGCATGTGTGTGTTTCCCACAGAGGCCAGAAAAGGGTATCTGATTCCT
TGGAAGTGGAGTTAGAGATGGTGGGAACTGCCATGTGCGTGCTGGGAACT
GAACCTGGGTCTTCAGCAAGAGAAAAAAGTGCTGTTGATCATCTCCAATA
CATTAAAACTGTATTTGACCGAAAAGCAGCTGCTTTTCTGGACTAGGCTC
AGAGGTGAAGTGATTGCATCCTGTGGTAATCCTGTGTTGCACACTGTGAG
GACGGTCACACTGTTGTCTGTGACCAAGGAGGTTCTATAAGCACCAGAAA
CAAACTAACAGGTACTGCATAAGTGCATTTCTGAATGGTCAGGAGTTTAG
TGTCATCAGAAGGCATCAAGCAGAACATAGGATGCACAGTTCTGCTCACG
TGATGAGGGCTTCTATTTAAAGGCCAAAGTAACCTCTTGAATTTCATTGA
GCAATAAGAGGAAAGCTTTAGAGCCATCTTGGTTCCAGGACTCCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_d23.g1 MSMg01no275_d23.g1 CHROMAT_FILE:
MSMg01no275_d23.g1 PHD_FILE: MSMg01no275_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:57 2005
         (672 letters)



>mm_chr5_147258732_147259803
          Length = 1072

 Score = 1230 bits (636), Expect = 0.0
 Identities = 660/668 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgccttttgaaggctatattcaatttcattatccctttttctgttgcagaagtgactt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 actgccttttgaaggctatattcaatttcattatccctttttctgttggaaaagtgactt 260

                                                                       
Query: 61  gcttttacctataagccatattgaataatgcttctgtgagcgtgcgtgtgcaaataccta 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gcttttacctataagccatattgaataatgcttctgtgagcgtgcatgtgcaaataccta 320

                                                                       
Query: 121 tttctgttttttaaaatgtatttattttatgtccatgactgttttgtgtacgtgtgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 321 tttctgttttttaaaatgtatttattttatgtccatgactgttttgtgtgcatgtgtgca 380

                                                                       
Query: 181 tgtgtgtgtttcccacagaggccagaaaagggtatctgattccttggaagtggagttaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgtgtgtgtttcccacagaggccagaaaagggtatctgattccttggaagtgaagttaga 440

                                                                       
Query: 241 gatggtgggaactgccatgtgcgtgctgggaactgaacctgggtcttcagcaagagaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggtgggaactgccatgtgcgtgctgggaactgaacctgggtcttcagcaagagaaaa 500

                                                                       
Query: 301 aagtgctgttgatcatctccaatacattaaaactgtatttgaccgaaaagcagctgcttt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgctgttgatcatctccagtacattaaaactgtatttgaccgaaaagcagctgcttt 560

                                                                       
Query: 361 tctggactaggctcagaggtgaagtgattgcatcctgtggtaatcctgtgttgcacactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggactaggctcagaggtgaagtgattgcatcctgtggtaatcctgtgttgcacactg 620

                                                                       
Query: 421 tgaggacggtcacactgttgtctgtgaccaaggaggttctataagcaccagaaacaaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaggacggtcacactgttgtctgtgaccaaggaggttctataagcaccagaaacaaact 680

                                                                       
Query: 481 aacaggtactgcataagtgcatttctgaatggtcaggagtttagtgtcatcagaaggcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaggtactgcataagtgcatttctgaatggtcaggagtttagtgtcatcagaaggcat 740

                                                                       
Query: 541 caagcagaacataggatgcacagttctgctcacgtgatgagggcttctatttaaaggcca 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagcagaacataggatgcgcagttctgctcacgtgatgagggcttctatttaaaggcca 800

                                                                       
Query: 601 aagtaacctcttgaatttcattgagcaataagaggaaagctttagagccatcttggttcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagtaacctcttgaatttcattgagcaataagaggaaagctttagagccatcttggttcc 860

                   
Query: 661 aggactcc 668
           ||||||||
Sbjct: 861 aggactcc 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)