Query= MSMg01no275_g23.b1 MSMg01no275_g23.b1 CHROMAT_FILE:
MSMg01no275_g23.b1 PHD_FILE: MSMg01no275_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:10 2005
(224 letters)
>mm_chr5_5342208_5342830
Length = 623
Score = 418 bits (216), Expect = e-121
Identities = 222/224 (99%), Gaps = 1/224 (0%)
Strand = Plus / Plus
Query: 1 gcctttattaaaaacgatgccaagagggggggggctaacaaggcccaagtgcactcacag 60
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 201 gcctttattaaaaacgatgccaagagagggggg-ctaacaaggcccaagtgcactcacag 259
Query: 61 ggatgcccagttctctcacagtctaggaatgtaggcttggaaaagataaacaaattccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggatgcccagttctctcacagtctaggaatgtaggcttggaaaagataaacaaattccac 319
Query: 121 ggacaatagtcaatcattcccggcctttcagtggatacactttcccctctcagaatacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggacaatagtcaatcattcccggcctttcagtggatacactttcccctctcagaatacaa 379
Query: 181 taaaaaaaagtcagtaactgaggctcagatcctgggcgcagctc 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaaaaaaagtcagtaactgaggctcagatcctgggcgcagctc 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 623
Length adjustment: 9
Effective length of query: 215
Effective length of database: 614
Effective search space: 132010
Effective search space used: 132010
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no275_g23.g1 MSMg01no275_g23.g1 CHROMAT_FILE:
MSMg01no275_g23.g1 PHD_FILE: MSMg01no275_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:10 2005
(358 letters)
>mm_chr5_5504797_5505553
Length = 757
Score = 600 bits (310), Expect = e-176
Identities = 346/358 (96%), Gaps = 2/358 (0%)
Strand = Plus / Minus
Query: 1 agtgtgtgctgtaaaccacaaggtagaatcctcagtgggtgagctgagctgcctcatgtt 60
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 395 agtgtgtgctgtaaaccacaaggtagaatcctcagtgggtgtgctgtgctgcctcatgtt 336
Query: 61 tattaaaagatgtatttttacaagtttgtctctgtccttttctcagctttaaaggttaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 335 tattaaaagatgtatttttacaagtttgtctctgtccttttctcagctct-aaggttaaa 277
Query: 121 tattttggaaagcatttgtcatgtgtatgtcaacgaaaataaagcactcctaaagaccat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tattttggaaaacatttgtcatgtgtatgtcaacgaaaataaagcactcctaaagaccat 217
Query: 181 ggctgcgtgctctggtctccgcagagacacgaacgacacagacaccaagttgggttcatg 240
|||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||| |
Sbjct: 216 ggctgcgtgccctggtctccgcggagacacgaacgacacggacaccaagtcgggttcacg 157
Query: 241 cagcaacttctttacttgtggcttttttttcctacagctctcttccccagcagcttcttc 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 156 cagcaacttctttacttgtggc-tttttttcctacagctctcttccccagcagcttcttc 98
Query: 301 ttctactccttcttgcagcttttcttacactacctcacttacagcagcttctcttaca 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 97 ttctactccttcttgcagcttttcttacactacctcacttatagcagcttctcttaca 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space: 261052
Effective search space used: 261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
