Query= MSMg01no276_f12.b1 MSMg01no276_f12.b1 CHROMAT_FILE:
MSMg01no276_f12.b1 PHD_FILE: MSMg01no276_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:16 2005
(234 letters)
>mm_chr5_139053235_139053869
Length = 635
Score = 408 bits (211), Expect = e-118
Identities = 226/235 (96%), Gaps = 9/235 (3%)
Strand = Plus / Plus
Query: 1 gatacctgtcttacataacacaaaattggatctgtattctgtattatgggagaaagtat- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatacctgtcttacataacacaaaattggatctgtattctgtattatgggagaaagtatt 260
Query: 60 atgttatctatacatgaatttaataattaaagaaaatgtaattatccagttttccttaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttatctatacatgaatttaataattaaagaaaatgtaattatccagttttccttaaa 320
Query: 120 gatgctgaacaatccttattactaggaataaatggattaataaaattctcctcagaaaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgctgaacaatccttattactaggaataaatggattaataaaattctcctcagaaaag 380
Query: 180 cacctaatatagtcctttta----cacaaggacaaacatattgctgatgtataca 230
||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 381 cacctaatatagtcc----aaagacacaaggacaaacatattgctgatgtataca 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space: 140850
Effective search space used: 140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_f12.g1 MSMg01no276_f12.g1 CHROMAT_FILE:
MSMg01no276_f12.g1 PHD_FILE: MSMg01no276_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:16 2005
(285 letters)
>mm_chr5_139261253_139261936
Length = 684
Score = 487 bits (252), Expect = e-142
Identities = 277/290 (95%), Gaps = 9/290 (3%)
Strand = Plus / Minus
Query: 1 tctaccaggactcatctggggagggactctgggtgtggttatctcaccccacacatatgt 60
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 567 tctaccaggactcatctggggagggactctgggtgtggttatcacaacccacacatatgt 508
Query: 61 cccaggactgtggatgac--------agtggcataccctccctttatagaaggaagttgg 112
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 507 cccaggactgtggatgacagtggtaaagtggcatacccttcctttatagaaggaagttgg 448
Query: 113 gggactgtgtacttatgaggatggatgctcgctgcttgtgctggggacttgtgactctgt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gggactgtgtacttatgaggatggatgctcgctgcttgtgctggggacttgtgactctgt 388
Query: 173 cctcatttcgatgccttgggaacctctaagttgcgagtggcccataagcccttctcaatg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cctcatttcgatgccttgggaacctctaagttgcgagtggcccataagcccttctcaatg 328
Query: 233 ggctatggcggacttctggcaatgtgcctgagagggattcaagatgaggt 282
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 327 ggctatggcggac-actggcaatgtgcctgagagggattcaagatgaggt 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space: 186300
Effective search space used: 186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
