BAC Information

Click to search

BAC

Clone NameMSMg01-276K22
Chromosome5 (Build37)
Map Location 43,381,204 - 43,381,561
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276K22.T7 (MSMg01no276_k22.b1)MSMg01-276K22.TJ (MSMg01no276_k22.g1)
ACCAG414799AG414800
length748757
length of high quality
(start - end)
276 (45 - 320)364 (388 - 751)
definitionCHROMAT_FILE: MSMg01no276_k22.b1 PHD_FILE: MSMg01no276_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:40 2005CHROMAT_FILE: MSMg01no276_k22.g1 PHD_FILE: MSMg01no276_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATCTTTTCATACAAGAGTTTCTTTTATGACCCTGGAAATTAAT
GGTAATAGGAGAATACTTCTNACCCTTGGGGTATATACATGGTATGATAG
AATATAACTGCTTCTTGTACAATTAAACTGTTCTTTTTTTTCCATTTTTT
ATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCC
ATACCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCC
TGGCGTTCCCCTGTACTGGGTTTTATAAAGGTTGCATGTCCAATGGGCCT
CTCTTTCTTTTGATGCCTTTCCAGGACAANCCCTGATACATATGCAGNTA
GAGTCAAGAGCTCCGGGGTACAAAAAAAAAAAAAAGATGTTCCGCCTATA
GGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATT
GGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTG
TTTGCTAGGCCCCGGCATAGTCTCACAAGGGACAGCTACATCTGGGTCCT
TTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTG
ATTATGGGGTGGATCCCTGGATAAGGTAGTCTCTACATGGTCCATCCTTT
CATCTCAGCTCCAAATTATGTCTCTGTAACTCCTTCCATGGTTGTTTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATATACACCAAATGTATAGAAG
AGCATTACTTGATCTCTGCATTTTCCCTAGCATTTGCCATTTTCATTTTG
TGTCTTATTTAAGGTTTCTATAAGTGTGAGAAAACACCATAAAAAAAACC
AGAAGGGGAAAAAGTTTATTCATTTCAGCTTAGAGTTCCATATCACTGCC
CATCAATGAAGGAAGTTAGGAACTCAAGGCAGGAACTGGAGCAGAAGGAA
TGGAGAACTTACTAGCCTGCTGCTCATGGGTTACTCAACTTGCTTTCTCA
TACACTTATACCATCTTTTTTGGCGCCACCCACCCGCGAACAGAGCCTTC
CCACATTAACCATTATATCTTCTCACTTAAGGATACCTCTTCTCAAAGGG
CTCTAGTTCTGTCAAGTTTATATAAAACTAGTCAAAATATTTGCATTCCC
TGATGATGAGTAAAACTTCGTATTGTCATACATCTACTGGCCTTTTGTAT
GACTGCTTTTGAGAAATGTCATTCAGAGTATTTGCCCATTTTAGCTAGAC
TGTTATTATATTTTATACTACTGTTTGATTTCCTGATATGTCCTTAACAG
CAAAATATAAAACTACACTTTAATTCAATAATCCAACTACTAGGTATACA
TCTAAAGGAAATTAGCATACTAAAGAGCTATAATCACACAACATTTCTTT
TGGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_k22.g1 MSMg01no276_k22.g1 CHROMAT_FILE:
MSMg01no276_k22.g1 PHD_FILE: MSMg01no276_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:40 2005
         (364 letters)



>mm_chr5_43381004_43381767
          Length = 764

 Score =  646 bits (334), Expect = 0.0
 Identities = 352/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacagagccttcccacattaaccattatatcttctcacttaaggatacctcttctcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct: 201 gaacagagccttcccacattaaccattatatcttctcacttaaggttccctcttcccaaa 260

                                                                       
Query: 61  gggctctagttctgtcaagtttatataaaactagtcaaaatatttgcattccctgatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctctagttctgtcaagtttatataaaactagtcaaaatatttgcattccctgatgat 320

                                                                       
Query: 121 gagtaaaacttcgtattgtcatacatctactggccttttgtatgactgcttttgagaaat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtaaaacttcgtgttgtcatacatctactggccttttgtatgactgcttttgagaaat 380

                                                                       
Query: 181 gtcattcagagtatttgcccattttagctagactgttattatattttatactactgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcattcagagtatttgcccattttagctagactgttattatattttatactactgtttg 440

                                                                       
Query: 241 atttcctgatatgtccttaacagcaaaatataaaactacactttaattcaataatccaac 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctcctgatatgtccttaacagcaaaatataaaactacactttaattcaataatccaac 500

                                                                     
Query: 301 tactaggtatacatctaaaggaaattagcatactaaagagctataatcacacaacatt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tactaggtatacatctaaaggaaattagcatactaaagagctataatcacataacatt 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)