BAC Information

Click to search

BAC

Clone NameMSMg01-276L01
Chromosome5 (Build37)
Map Location 89,676,158 - 89,808,208
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18, Ankrd17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276L01.T7 (MSMg01no276_l01.b1)MSMg01-276L01.TJ (MSMg01no276_l01.g1)
ACCAG414805AG414806
length771777
length of high quality
(start - end)
322 (46 - 367)234 (132 - 365)
definitionCHROMAT_FILE: MSMg01no276_l01.b1 PHD_FILE: MSMg01no276_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:40 2005CHROMAT_FILE: MSMg01no276_l01.g1 PHD_FILE: MSMg01no276_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,807,891 - 89,808,208)(89,676,158 - 89,676,391)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAATTCTGAGGAAGAAGAAACTTACTTCCATGGGAAGAGATCTG
ATCCTAAGACATGAGAGGATGGGGTCAACTTCACAATCCCTCTACTGCTT
ATCTGGGGACATAAAAGTTTCAGGTAAAATAAGAGAGATACTAGCTGTCT
GAGGAAGAAGAAATGGAAAAGGAGAATTTTAGAAAACTGGGAAATAGTGA
GATCATTCAGAAGCAGGAGCATGGGGCCTTGTTTCCTGGGGTCATCCCCC
ACTGTACTTGCATGGGTCTGGACTTATGCATACCAGAGACTCTGAAAACT
AAACATCAGAGAGTTTCTTTTATTTTTAGACTGACCACCGAAGGGCACAT
GTAAGGTGTTAGGTGTAAATGTATGGCAAAGATTCTGAAAATAGACATAA
AGAAGAGATTATTTTAACAGCTCATGAAGATATTGAAACAGAAACGAGTG
AGTACCACTAGGAAGTCTACATCATACAAAGTTAACAACACAAATGTAAT
ATGTGGGCCAATTACTTTAAATCTATAAACTGTCTAACCCAAAGGCTCTC
AATCTGTGGATCACGACCTCTTGTGAGTTGAATGACCCTTTCACGGGGGT
TACCTTACAACTCTGGAATACATAGATGTTTACTTTACAACTCATAACTC
TCAAAATTACAGTTAAAAAGTGGTCATGAACATAATTTTATGGCTGGAGG
TCACAACAACATGAAGAACTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAACAAGAAAGGAATTACATG
TTCTATGAAATAATGTTAAAAATTGAACCCTAAAAGGATATATAATATGT
GTGTGTATTAAAATATAAGCCTCAGTGGTCACAAGAAGACACGGTCTAAA
ATATGTACACACAGGATTGTATAATTTTAGATCATTAAGAACAAAGTTTT
TATAACACTAAAAAAACAAAATTAAATTAATTTTTAAAAATTTTGTTTTA
ATTGTACTTTAAAAAATAAGATATAGTATTAATTCTTAAATAAATATTTT
AAACACAGTGAGAGTATATACTGCTTATTACCCCGCACCATCTTTTCTTT
TTCTAAAAATCTTAAACTTCCCATAATCCAACTTATACTATGCTCTAGGT
AGAAGTATTGATTGATCAGCATAAAGCTATTGAGAACTTAGTGTCTCTGA
TTTCTAGTTGAAATCACCTGTTAACTCTGCTGACTCTACCCAATGTTTTC
TGTGTTCCATTCCTAGGATCCTAGGCTAATTCTTCCATAGCAGAAAACAT
ATTTCCAGTACTACTTAATTTATAATTTTTGAAAATATTTTTATTATTAA
ATTTCCGATTTAATTTTTTTTTTAAAAATGGAAGGTGTTTAAAAAAAGAA
GTTGGTCTAAAGTAAGAATTTAAAAACCAAAATGGGAGTAGGGGGTTTGG
GTTTTGGTTTTTTTTTTTTTGGACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_l01.b1 MSMg01no276_l01.b1 CHROMAT_FILE:
MSMg01no276_l01.b1 PHD_FILE: MSMg01no276_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:40 2005
         (322 letters)



>mm_chr5_89807773_89808494
          Length = 722

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaattctgaggaagaagaaacttacttccatgggaagagatctgatcctaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaattcccaattctgaggaagaagaaacttacttccatgggaagagatctgatcctaaga 377

                                                                       
Query: 65  catgagaggatggggtcaacttcacaatccctctactgcttatctggggacataaaagtt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 catgagaggatggggtgaacttcacaatccctctactgcttatctggggacataaaagtt 317

                                                                       
Query: 125 tcaggtaaaataagagagatactagctgtctgaggaagaagaaatggaaaaggagaattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcaggtaaaataagagagatactagctgtctgaggaagaagaaatggaaaaggagaattt 257

                                                                       
Query: 185 tagaaaactgggaaatagtgagatcattcagaagcaggagcatggggccttgtttcctgg 244
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 256 taggaaactgggaaatagtgagatcattcagaagcaggagcatggggccttgcttcctgg 197

                                                                       
Query: 245 ggtcatcccccactgtacttgcatgggtctggacttatgcataccagagactctgaaaac 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 196 ggtcatcccccactgtacttgcatgggtctggacttatgcatgccagagactctgaaaac 137

                             
Query: 305 taaacatcagagagtttc 322
           ||||||||||||||||||
Sbjct: 136 taaacatcagagagtttc 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no276_l01.g1 MSMg01no276_l01.g1 CHROMAT_FILE:
MSMg01no276_l01.g1 PHD_FILE: MSMg01no276_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:40 2005
         (234 letters)



>mm_chr5_89675958_89676591
          Length = 634

 Score =  406 bits (210), Expect = e-118
 Identities = 228/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaggatatataatatgtgtgtgtattaaaatataagcctcagtggtcacaagaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaggatatataatatgtgtgtgtattaaaatataagcctcagtggtcacaagaagaca 260

                                                                       
Query: 61  cggtctaaaatatgtacacacaggattgtataattttagatcattaagaacaaagttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggtctaaaatatgtacacacaggattgtataattttagatcattaagaacaaagttttt 320

                                                                       
Query: 121 ataacactaaaaaaacaaaattaaattaatttttaaaaattttgttttaattgtacttta 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 321 ataacactaaaaaaacaaaattaaattaattttttaaaattttgttttaattgtactttg 380

                                                                 
Query: 181 aaaaataagatatagtattaattcttaaataaatattttaaacacagtgagagt 234
           |||| |||||||||| |  |||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagtaagatataggaagaattcttaaataaatattttaaacacagtgagagt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)