BAC Information

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BAC

Clone NameMSMg01-277L14
Chromosome5 (Build37)
Map Location 31,541,840 - 31,542,148
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g
Downstream geneENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277L14.T7 (MSMg01no277_l14.b1)MSMg01-277L14.TJ (MSMg01no277_l14.g1)
ACCAG415545AG415546
length740798
length of high quality
(start - end)
313 (41 - 353)197 (78 - 274)
definitionCHROMAT_FILE: MSMg01no277_l14.b1 PHD_FILE: MSMg01no277_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:55 2005CHROMAT_FILE: MSMg01no277_l14.g1 PHD_FILE: MSMg01no277_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGATGTTCCATTAAAAGATGCACTTACCTAAAATGTATAGCACACCATTT
CAAAGTTTGTTCTAGCCTCAGAAGGGTGCTCATCCTCTCCAGATTAGCCT
TTCTGCCAAAGCCATTGGAACTCCTGAGCCATGGCAAGCATTCATGACAT
ATCTGTTCATGCTACTTTAGTTCCTATTATTTTCTGTCAGTACTATTTCA
AATGTGCACAGAGGATCTTTTGGCAACCTCATTTTCAGTTATTTTCTCAT
GTATACCTGAAATGATCAACTGCTGCCTACATTTTTACCACCTCACTTAT
GTTTTCTGATTACACCACCCCCACATACTAGCCAGATGATGGTTGTGCAT
GCCTTTAATCCCAAAAAAACAGATGCAGAGGCAGGTGGATATCTGTGCAC
TTACAGACAGCCCAGTCTACAGAACAAGTTCCAGGACAGCCACGGCTACA
AAGAGAAATCCTGACTTGAAAAACCCAAAGCTAACCAAAAAATAATGAAT
GCTTATTATTAAAACTCAGAAACCAGCTTGACTGAGGACCAAGCCTTTAA
CTCCATGACTCAGGAGGCAGAGGCCGCACGTTCTTTGAATTCTAGGTTAG
CCCGGACATTACATCTGACTTCTAAACCGTCCGGTCTACCTCAAAAAACC
TGTCTGCCTAATTTTAACCCACCTATATTTTGATACGGAG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCACTGTGAGCCAGGCACAGC
TGTAAGCACTGGAGATACAAACCACACAAGGTCCGTGCCCTTATGGGCGT
CGTCAACTGAGAAAGTCAAACATTAAACAAATTACTATGAAAATAATTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCT
GTCTGTCTGTATCATGGTGAAGGTTGTGGTGTACATAAGGAGAGGAGAAC
TCAGTTTAAAACCTTGTCTTTTTTTTTTCGCGTTGCCCCACACCTTTAGT
CCCAACTGTTTTTTTTTTTTCCCCCCCCCCCCCAAATAGNGTTTTCTATG
ATTTTCTCCTTTGCTCTTACATAAAAAGAAATGACAATTTTCCTGTCTGA
GGAATCACGCTCTTGACATCTGTGTTCTCGACATCAATAACTCTTTATAA
TTTCTTTTTATACTACTTCTCACCTAGCCATTGACTTTCTCTGTCGCTTT
TTTGTGCCTTCTTTATATTCGCATCCATTATCATTCACTCCTTTTCCCTT
TACTTAGCTTTTTCTCTTCTTTCCATTTGACACCTTGTTTTTATGTTGCT
TCCCCCTCCATTCTTACTTTTTTCGTCCCCTCTGAACGGATTTCTACTAT
TCTGCTCCTCTTCCCATTCTCTTAATATCCCTATCTTTTATCTTTTACCT
ACTACTTTCCCCTTGCGCCCACTTTCTTCCACTGTCCTCTTCCTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_l14.b1 MSMg01no277_l14.b1 CHROMAT_FILE:
MSMg01no277_l14.b1 PHD_FILE: MSMg01no277_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:55 2005
         (313 letters)



>mm_chr5_31541636_31542348
          Length = 713

 Score =  551 bits (285), Expect = e-161
 Identities = 303/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgatgttccattaaaagatgcacttacctaaaatgtatagcacaccatttcaaa 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctgatgttggattaaaagatgcacttacctaaaatgtatagcacaccatttcaaa 454

                                                                       
Query: 65  gtttgttctagcctcagaagggtgctcatcctctccagattagcctttctgccaaagcca 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtttgttctagtctcagaagggtgctcatcctctccagattagcctttctgccaaagcca 394

                                                                       
Query: 125 ttggaactcctgagccatggcaagcattcatgacatatctgttcatgctactttagttcc 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttgtaactcctgagccatggcaagcattcatgacatatctgttcatgctactttagttcc 334

                                                                       
Query: 185 tattattttctgtcagtactatttcaaatgtgcacagaggatcttttggcaacctcattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tattattttctgtcagtactatttcaaatgtgcacagaggatcttttggcaacctcattt 274

                                                                       
Query: 245 tcagttattttctcatgtatacctgaaatgatcaactgctgcctacatttttaccacctc 304
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 273 tcagttattttctcatgtatacctaaaatgaccaactgctgcctacatttttaccacctc 214

                    
Query: 305 acttatgtt 313
           |||||||||
Sbjct: 213 acttatgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)