Query= MSMg01no277_m07.b1 MSMg01no277_m07.b1 CHROMAT_FILE:
MSMg01no277_m07.b1 PHD_FILE: MSMg01no277_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:58 2005
(312 letters)
>mm_chr5_124957491_124958202
Length = 712
Score = 557 bits (288), Expect = e-163
Identities = 300/304 (98%)
Strand = Plus / Plus
Query: 5 gaattccaaatccttctgccttagcttccttagtgctgggctcacaagtgtacatcatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatccttctgccttagcttccttagtgctgggctcacaagtgtacatcatca 264
Query: 65 tgccccagtgaacctagtgatactcgtaaagtctcttccgtccttagcattcagggggcc 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccccagtgaacttagtgatactcgtaaagtctcttccgtccttagcattcagggggcc 324
Query: 125 ccggctccctagctgtggctgtgttcagccaagacatagcgagctggggatggagtgacg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 ccggctccctagctgtggctgtgttcagccaagacatagcgagctggggatggagtgatg 384
Query: 185 ggttcagtggttgcgagcactgactgctctcccaggggtcctgaattatattcccagccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggttcagtggttgcgagcactgactgctctcccaggggtcctgaattatattcccagccc 444
Query: 245 ccatatggcagctcccaactgtctgtaagtctgttataggatgccctcttctggtatgca 304
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 ccatatggcagctcccaactgtctgtaagtctgttatctgatgccctcttctggtatgca 504
Query: 305 gaca 308
||||
Sbjct: 505 gaca 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_m07.g1 MSMg01no277_m07.g1 CHROMAT_FILE:
MSMg01no277_m07.g1 PHD_FILE: MSMg01no277_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:58 2005
(290 letters)
>mm_chr5_125201785_125202474
Length = 690
Score = 522 bits (270), Expect = e-153
Identities = 286/292 (97%), Gaps = 2/292 (0%)
Strand = Plus / Minus
Query: 1 tgtaacatgatagtcctccgttgatcagagcgggcttgctgcagcgtccactcatgctat 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 441 tgtaacatgatagtcctccgttgatcagagcgggcttgctgcagcgtgcaatcatgctat 382
Query: 61 gctgtcatcattactgaacttggaggagagcagactgaaggagaagggaacaaacttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtcatcattactgaacttggaggagagcagactgaaggagaagggaacaaacttggt 322
Query: 121 gcctgcaccaacgtataatttgttctgaaattctaccctacagaaagaaaaatgaacacg 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgcaccaacgtagaatttgttctgaaattctaccctacagaaagaaaaatgaacacg 262
Query: 181 tattaaacactatggactgcaccctggaactgtgagtgacttaatgtttctacacttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattaaacactatggactgcaccctggaactgtgagtgacttaatgtttctacacttcct 202
Query: 241 ttttggttttgtttt--gttttgttttgtttttttgagacagggtttctctg 290
|||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggtttttttttttgttttgttttgtttttttgagacagggtttctctg 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
