BAC Information

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BAC

Clone NameMSMg01-279P12
Chromosome5 (Build37)
Map Location 104,190,289 - 104,190,574
singlet/doubletsinglet
Overlap geneAff1
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik
Downstream geneKlhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279P12.T7 (MSMg01no279_p12.b1)MSMg01-279P12.TJ (MSMg01no279_p12.g1)
ACCAG417183AG417184
length772775
length of high quality
(start - end)
214 (149 - 362)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no279_p12.b1 PHD_FILE: MSMg01no279_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:42 2005CHROMAT_FILE: MSMg01no279_p12.g1 PHD_FILE: MSMg01no279_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGAGAAGTTTACCTATTCAGTAACATTCAAATTTACTTCTAGTA
GAGACAGTGAAACTAATTAGGCATTACAAAGAACAGAGCTAGAATATCCC
CCAGGATAGTCTGCAGAGTGATTACTTAGGACAGTAGCCAGTCTCACCCA
AACAAGGGAATACACAATGGCCTAGCTAATAGGTGGGTTTACCATAAAAG
AGTTAGGGAATCCTCCTGAGACAGGTTTCTTCACTAGGCCCAAAGGAACA
GCATGATCAGGCATTTACAGCATGATCAGGCATTTACCACCCCTGGTGGT
GGGCTTAACAATAGACTATCATTACAACTGCCTCCCTTCTTAGTGGTAAA
CGAGGCCTGGTCCCTGCCATTTTTTGATGGATACATTCCTTTTGTTTTCT
GGAGGCCTGGTCCCTGCCATTTTTTGATGTATACATTCCTTTTGTTTTCT
GTCACTGTAACTTAGCGGATGTGTTCTCCTGGTTTCTTGTTATTCTTCTG
TATAAAAAGTTTGATGCTCGATTTGACTAACTACACTCAGATTCAACATG
CTCTCTCATGTCATCTTTGTTTGTCATTCGCTGACTCCTTCACCCACCTG
CAACCAGAGACCCATTCCTCGCAGATAAGAGACCCAAAGGGGGGTTAGTT
TGCAGCACTTAGCTATCAGGGAAATGCAAATCAAAAGTAGATTCCATCTC
ACTTCACTTAGAACACTGTCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATTTCTGGTTAACAGGGTT
CTTTTTAATTGGTAGTATTGGGTTACCAAAACATAATATTCTAATTTTGT
TTCCTTTTTTTTTTTTTATTCTGGAAGGAAAATTTCATATCACTGGGAGA
CTATGCTTAATTTTAAATAGTTTTTAAGACTTTTAAAAAACCGATATGTT
AACTCAAGTGCCAACTTCATCTTGTTTTCAAGTGACTTTAAGGAGCTGTT
TGCCTCTTTCTTTCATAGCCTGTGTCTTCCATTGACCTTCTAGACACAGA
CCATGTCTCCTTATCTTCANTTACCCAACCATGCCCCCTGCACTCTGGAG
GCCAGAAGCAGGTGGATCTCTGTGAGAAAAAAAAAAACCTGGTTTACAGA
GCAAGATGTTATACAGAGAAATCCTGTCTTGAAAAATCTAAAACAACAAA
CAAAAACTGTAAATAAAACAAAATCATGTAAGTTGCCAGCGTGCGTGGGT
TTTGTTCCTCGATTCCATGGCAAGGACTTTTGATTCTTAGAATGCCTCGG
TTACTCTCAGCCACCACGAAGTTCTGAAGTTATTAAGCAGTAGTCGACAG
GCTCATTTGTCTTGATTTTAATTTGTAGCTTTTAACAAAATGCCCGGAAA
TTTTCGAGCACTGTCTTCTTGAGTCCCCATTGTCCTTTGATGTTGTTGAA
ATGTTTTCTCACCATATTATCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_p12.g1 MSMg01no279_p12.g1 CHROMAT_FILE:
MSMg01no279_p12.g1 PHD_FILE: MSMg01no279_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:42 2005
         (288 letters)



>mm_chr5_104190089_104190776
          Length = 688

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatttctggttaacagggttctttttaattggtagtattgggttaccaaaacataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatttctggttaacagggttctttttaattggtagtattgggttaccaaaacataat 260

                                                                       
Query: 61  attctaattttgtttcctttttttttttttattctggaaggaaaatttcatatcactggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctaattttgtttcctttttttttttttattctggaaggaaaatttcatatcactggg 320

                                                                       
Query: 121 agactatgcttaattttaaatagtttttaagacttttaaaaaaccgatatgttaactcaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 agactatgcttaattttaaatagtttttaagacttttaaaaaactgatatgttaactcaa 380

                                                                       
Query: 181 gtgccaacttcatcttgttttcaagtgactttaaggagctgtttgcctctttctttcata 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gtgccaacttcatcttgttttcaagtgactttgaggagctgtttgcctctttctttcata 440

                                                         
Query: 241 gcctgtgtcttccattgaccttctagacacagaccatgtctcctta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctgtgtcttccattgaccttctagacacagaccatgtctcctta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)