Query= MSMg01no280_k19.b1 MSMg01no280_k19.b1 CHROMAT_FILE:
MSMg01no280_k19.b1 PHD_FILE: MSMg01no280_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:34 2005
(531 letters)
>mm_chr5_133649257_133650187
Length = 931
Score = 944 bits (488), Expect = 0.0
Identities = 524/548 (95%), Gaps = 20/548 (3%)
Strand = Plus / Plus
Query: 4 ggaattccaaagccactctattctgtgctgaaacttgctcaattttggcacagcatagac 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaaagccactttattctgtgctgaaacttgctcaattttggcacagcatagat 263
Query: 64 gagcctagctcatagttcgctttgcacagggtaacttggcaccgagtccgggaaagaggt 123
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagcctagctcagagtttgctttgcacagggtaacttggcaccgagtccgggaaagaggt 323
Query: 124 aaattttaagtcgctggtgccaactgggtgcaggaacaagtcagaaacagaaagcacaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattttaagtcgctggtgccaactgggtgcaggaacaagtcagaaacagaaagcacaca 383
Query: 184 tcttcatatgccagctgctgagacgcgaggaaaacccaaaacctacccgggaaacatctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttcatatgccagctgctgagacgcgaggaaaacccaaaacctacccgggaaacatctt 443
Query: 244 ttcaactagccatttttatttgtgtgtgcactcaatgcattcgtgcatatgagtgtgcac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcaactagccatttttatttgtgtgtgcactcaatgcattcgtgcatatgagtgtgcac 503
Query: 304 ataggtgtgtgtacatttgtgtatgtgcacatgtgtttgtgcagatgtgtatgtgtgtat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataggtgtgtgtacatttgtgtatgtgcacatgtgtttgtgcagatgtgtatgtgtgtat 563
Query: 364 gtaagtcgtgctgggttgaaacccagagctttatgaatgctaaatgtgttcttttagaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtaagtcgtgctgggttgaaacccagagctttatgaatgctaaatgtgttcttttagaat 623
Query: 424 taatgtaatgattttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---- 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taatgtaatgattttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 683
Query: 480 --acacgcgcgcgc--------------ctgactgtctgaatgtgtaccatgtttgcagg 523
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 gtacacgcgcgcgcgcgcgcgcgcgtgcctgactgtctgaatgtgtaccatgtttgcagg 743
Query: 524 tgtcttag 531
||||||||
Sbjct: 744 tgtcttag 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_k19.g1 MSMg01no280_k19.g1 CHROMAT_FILE:
MSMg01no280_k19.g1 PHD_FILE: MSMg01no280_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:34 2005
(291 letters)
>mm_chr5_133828630_133829320
Length = 691
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Minus
Query: 1 tttccccagtaggacaatgattccctcatcttagctctgcaaggtctctactttatggga 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 491 tttccccagtaggacaatgattccctcatcttagctctgcaaggcctctattttatggga 432
Query: 61 tcttggaggctcaaagcagctatctaccatccaaatcagcctgcacttttgtcttcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcttggaggctcaaagcagctatctaccatccaaatcagcctgcacttttgtcttcagtg 372
Query: 121 gacgatccccaaccccctttcaaacaagcattattgcaaccattttataaaacccagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gacgatccccaaccccctttcaaacaagcattattgcaaccattttataaaacccagaca 312
Query: 181 gaaagagctccccaatgtctctttcgagtagcttggtgtggcaatcttgtcaccaggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaaagagctccccaatgtctctttcgagtagcttggtgtggcaatcttgtcaccaggcca 252
Query: 241 catagaagtgcctcttgccctcttcattactgatttccaacttgtgaaagg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 catagaagtgcctcttgccctcttcattactgatttccaacttgtgaaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
