BAC Information

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BAC

Clone NameMSMg01-288B17
Chromosome5 (Build37)
Map Location 122,908,723 - 122,909,023
singlet/doubletsinglet
Overlap geneAtp2a2
Upstream geneTmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
Downstream geneIft81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288B17.T7 (MSMg01no288_b17.b1)MSMg01-288B17.TJ (MSMg01no288_b17.g1)
ACCAG418023AG418024
length745744
length of high quality
(start - end)
324 (49 - 372)313 (396 - 708)
definitionCHROMAT_FILE: MSMg01no288_b17.b1 PHD_FILE: MSMg01no288_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:07 2005CHROMAT_FILE: MSMg01no288_b17.g1 PHD_FILE: MSMg01no288_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGAT
CCGCGGAATTCCAGGCATGTTTCACCACATGAAGCTTGAATTTATTTTTA
TTGATGTGTGTGTGTATGTGTCTTTGTGTGTACATGTGTGCTACCGCATG
TGTGTGGAAATCAGAGGAGTGGGAGTTGGTCCTTTCTTTCCACCATGTTG
GTCTAGGTGACAAATGCAAGCCTTCAGGCTTGGTAGCAAACTCCTTTACC
CATGGAGCCCTCTTTCCAGCCCTTGAATTACTTTTAAGTATACAGTGGAG
GGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGTCTGCTCTCCCAGAGG
TCCTGAGTTCAATTCCCAATGATTTTTTGGTGGCTCATGACCATCTGTAA
TGGGATCCAATATACTCTTCTGGTGCGCCTGAAGACAACTACAGTGTAGT
CATAAAATAAAAAATAAATCATAAAAAATATAAAATAAGCTGAGCAGTGG
TGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT
CTGAGTTCGAGACCAGCCTGGTCTACAGAGTAAGTTCTAGGACAGCCAGG
GCTATACAGATAAATCCTGTCTAGAAAACCAAAAATCAAAACAAAACATA
TATTTATCATAAAAATATCTAATATATTATATATATATACTCTACTAATG
TATATGTATATGCATATGCATATGTATATGTATATGTATATGCAN
NNACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTACTANCACAGGGCT
TTAAAAAAAAAAAAAGTGGCTAAATACCAGCTGCGCAGAAGGAGACTCTT
GGACCGCCATCAGCAGCGATGAACCACCATGCAGCAGCACCCACGGTGGC
AGCGCCAACATAACCTAGAAACAAAGCTGCAGGTTACCACACTGGCCAGA
GCAGCTGACCACAGACAGGGCGTTTCTGGTCTAAAAAGGAAATAGGCAAT
GTCTCTAGAGTTTGTGAGGAAATGTTCCTGCTGACTCCAGCCCACGCCCT
GCACTAGGTGCCACAGAGCTAAAGTATTTTTCATAGGCTCCCGACAACAG
GTGGAGGTCAGGCCCATCCATCCCAGCAGACACAACACACAAGGAACTGA
GGAAACCAAGTCACACCAGTCTATAGGCAAACGGAGGTGACCTTGTTGGA
CACTAGGTAACTGCACTGTTCCAGGTATGGCCAAGCAGAACCCTTTCAAA
GAACTGCCATTACAATGCTGGCCCCCACCCCTCAGCACCAGAGTTAGGTC
TAAGGCAGAGGCCATTCCTCATCATTCAGATTTCATTTCAGGAAATCTGC
AAAGCTGACACTGGTTTATCCACGGTCATAATCACCTAACCAACAGCAGA
GCACACAGCTAACCTGGAATTACAGTGGTGCACGAGGGCACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_b17.g1 MSMg01no288_b17.g1 CHROMAT_FILE:
MSMg01no288_b17.g1 PHD_FILE: MSMg01no288_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:07 2005
         (313 letters)



>mm_chr5_122908523_122909235
          Length = 713

 Score =  528 bits (273), Expect = e-154
 Identities = 298/313 (95%), Gaps = 12/313 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaggtggaggtcaggcccatccatcccagcagacacaacacacaaggaactgaggaaa 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aacaggtggaggtcaggcccatccatcccagcagacagaacacacaaggaactgaggaaa 260

                                                                       
Query: 61  ccaagtcacaccagtctataggcaaacggaggtgaccttgttggacactaggtaactgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagtcacaccagtctataggcaaacggaggtgaccttgttggacactaggtaactgca 320

                                                                       
Query: 121 ctgttccaggtatggccaagcagaaccctttcaaagaactgccattacaatgctggcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttccaggtatggccaagcagaaccctttcaaagaactgccattacaatgctggcccc 380

                                                                       
Query: 181 cacccctcagcaccagagttaggtctaaggcagaggccattcctcatcattcagatttca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||          |
Sbjct: 381 cacccctcagcaccagagttaggtctaaggcagaggccattcctcatca----------a 430

                                                                       
Query: 241 tttcaggaaatctgcaaagctgacactggtttatccacggtcataatcacctaaccaaca 300
           ||||||||||| ||||||||||| |||||||||||||||||||  |||||||||||||||
Sbjct: 431 tttcaggaaatttgcaaagctgagactggtttatccacggtca--atcacctaaccaaca 488

                        
Query: 301 gcagagcacacag 313
           |||||||||||||
Sbjct: 489 gcagagcacacag 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)