CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGTTTGATGACTTAGCTAGACCCAGTGCTCTGTGAAACCCAGTG
CTCCTCCTGCCCCCACCTCTTCACTTATAGGATTGGAAGTATGTGTTGCT
GTGCACAATACTGAGAATCGAAACTCAGGTCCTCATAGCAAGACAGGAAG
GTCACCAAAAATGTTCGGCATGGAGATGGAGATATAGCTCAGTGGTCGGG
AGTACTTGCTGCTCTTGCGGGGGACCCAAATATGTTTCTCAGAACCCATA
CCAAGTAGCTGTCAACTGCCTGAAACTCTAGAAATAAGGGATCCTGGGCC
CTTCTGGCCTCTAGGAGCTCCTGCATTCCCATTTACAAACCCATAAGCAT
ATACCCAGAATTAGAAATAGAAGTAAGAATCTTTAATATGCATTGCAAGA
TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTGTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGCGCACGCACTGTG
TGTGCATGTTGTCAGGAATACAACAGAGGGTCTCTGTATGGTAGATAAGA
TATCTATCGCAGAGCAGAGCAACACACCCTCAGCCTCAGCCTCCATCCTG
GAGGATTCTATGAAAGTGTTGTGTTCACTGAGCCGCACGCACTTCAGCCT
TATGAGCACGCTTGACAGTTTGACCAGAAGCTCCTAAATTACAAACTAGG
CTATACTCCTTTCAAAT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCACCAACCGGCAGTGGAAGGAGAGAA
ATAACTCCGAACACTTGTCCTGTCTTCTGTACACATGCCACAGCAAGAGA
GCAGCACCCTCTCCCTCACACATGCATCACAGACACATTCACGCAGCAGT
GATAAATTAGTTTGAAAATAAGTTAATATATTTCCTTTATTTTTAATTAA
TTATCTTTCTTTTGTGTTTTTATTGTGTGTGAGAGGTATGCAAATGTTTG
CATGTGCATGTGTGTACCTGTGTAGGGAAGGTGGAGGTCATGTGTCTTTC
TCAATTGCTCTTTTTTTTTCTTTTCTTTTCTTTTTTTCCTTTTTTTTCTT
TTTTTATTAGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGT
CCCCCACATGCTCTCCCACCCACTCCCCCACCCACTCACTCCCACTTCTT
GGCCCTGGCATCGCCCTGTACTGAGGCATATAAAGTTTGCATGACCAATG
GGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATACATATGC
AGCTAGAGACACGAGCTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTC
CACCTATAGGGTTGCAGATCCCCCCAGCTCCTTGGGTACTTTGTTTAGCT
CCTCCATCGGGGGCCCTGTTATCCATCCAATAGCTGACTGTGAGCATCCA
CTTCTGTGTTTGCTAG

Query= MSMg01no288_f11.g1 MSMg01no288_f11.g1 CHROMAT_FILE:
MSMg01no288_f11.g1 PHD_FILE: MSMg01no288_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:24 2005
         (685 letters)



>mm_chr5_133337654_133338738
          Length = 1085

 Score = 1172 bits (606), Expect = 0.0
 Identities = 666/686 (97%), Gaps = 3/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaccaaccggcagtggaaggagagaaataactccgaacacttgtcctgtcttctgta 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaccaacctgcagtggaaggagagaaataactccgaacacttgtcctgtcttctgta 260

                                                                       
Query: 61  cacatgccacagcaagagagcagcaccctctccctcacacatgcatcacagacacattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatgccacagcaagagagcagcaccctctccctcacacatgcatcacagacacattca 320

                                                                       
Query: 121 cgcagcagtgataaattagtttgaaaataagttaatatatttcctttatttttaattaat 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcaacagtgataaattagtttgaaaataagttaatatatttcctttatttttaattaat 380

                                                                       
Query: 181 tatctttcttttgtgtttttattgtgtgtgagaggtatgcaaatgtttgcatgtgcatgt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tatctttcttttgtgtttttattgtgtgtgagaggtatgcaattgtttgcatgtgcatgt 440

                                                                       
Query: 241 gtgtacctgtgtagggaaggtggaggtcatgtgtctttctcaattgctctttttttttct 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtacctgtgtagggaaagtggaggtcatgtgtctttctcaattgctctttttttttct 500

                                                                       
Query: 301 tttcttttctttttttccttttttttctttttttattaggtatttatttcatttacattt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcttttctttttttccttttttt-ctttttttattaggtatttatttcatttacattt 559

                                                                       
Query: 361 ccaatgctatcccaaaagtcccccacatgctctcccacccactcccccacccactcactc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 ccaatgctatcccaaaagtcccccacatgctctcccacccactcccccacccacccactc 619

                                                                       
Query: 421 ccacttcttggccctggcat-cgccctgtactgaggcatataaagtttgcatgaccaatg 479
           |||||||||||||||||||| | ||||||||||||||||||||||||||||  |||||||
Sbjct: 620 ccacttcttggccctggcattc-ccctgtactgaggcatataaagtttgcacaaccaatg 678

                                                                       
Query: 480 ggcctctctttccactgatggccgactaggccatcttctgatacatatgcagctagagac 539
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggcctctctttccactgatggccaactaggccatcttctgatacatatgcagctagagac 738

                                                                       
Query: 540 acgagctccggggggtactggttagttcatattgttgttccacctatagggttgcagatc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acgagctccggggggtactggttagttcatattgttgttccacctatagggttgcagatc 798

                                                                       
Query: 600 cccccagctccttgggtactttgtttagctcctccatcgggggccctgttatccatccaa 659
           |||||||||||||||||||||| | |||||||||||| ||||| ||||  ||||||||||
Sbjct: 799 cccccagctccttgggtactttctctagctcctccattgggggacctgcgatccatccaa 858

                                     
Query: 660 tagctgactgtgagcatccacttctg 685
           ||||||||||||| | || |||||||
Sbjct: 859 tagctgactgtgaacctctacttctg 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)