BAC Information

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BAC

Clone NameMSMg01-288F19
Chromosome5 (Build37)
Map Location 51,774,681 - 51,774,970
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15, Sod3, Gm447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288F19.T7 (MSMg01no288_f19.b1)MSMg01-288F19.TJ (MSMg01no288_f19.g1)
ACCAG418208AG418209
length753748
length of high quality
(start - end)
705 (49 - 753)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no288_f19.b1 PHD_FILE: MSMg01no288_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:25 2005CHROMAT_FILE: MSMg01no288_f19.g1 PHD_FILE: MSMg01no288_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAAACCTGTACCCAAGCTTCAGTGCAGTAGCTGGATATAGA
ATTAACTCAAATAAATCAGTGGTCTTTCTCTACACTAAGGATAAACAGGC
TGAGAAATATTTGGGAAATAATACCCTTCACAATAGTCACAAATAATATA
AAATACCTTGGTGTGACTCTAACTAAGGATGTGAATGATCTGTATGATAA
GAATTTCAAGTCTCTTAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGA
AAGATTTCCCATGCTCATAGATTGGCAGGGTTAATACAGTAAAAATGGCT
ATCTTACTGGAAGCAATCTATACATTCAATGCAATCCCCATCAAAATTCC
AACTCAATTCTTCACAGAGTTAGTAAGGGCAATTTGCAAATTCATCTGGA
AAAACAAAAAACCTAGTATAGCAAAAACTATTTTCAACAATAAAAGAACT
TCTTATGGAATCACCATGCCTGACCTCAAGCTGTACTACAGAGCAATTCT
GATAAAAACTGCATGGTACTGGGACAGTGACAGACAGGTAGATCAATGGA
ATAGGATTGAAGACCCAGAAATGAACCCACATTCCTATGGTCACTTGATC
TTTGACAAGGGAGCTAAAATCATCCAGTGGAAAAAAGACAGCATTTTCAA
CAAATGGTGCTGGCACAACTGGTAGTTATCATATAGAAGAATGTGTGTTG
ATC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTGGCATTCAGGGTTTCTGCCTCA
TTCTCCACTTTCTTTCCTGTGTCCACAGACTTGCTATTTTGACTATATTC
TACCTGGGGATTCTAGAAAAGATCACCATGTCTCCTGAAGCTGTAAACTT
CATCCCCCTCTGTTCTTTGATTTCTGTGCTTTTTCTCTTCTTGTTCCTAA
AGCCATTAGATGCTCAGTTAATTGGTTTTATTGAACTAGTCTATCAAAAT
AAAGTTTCACTCAGAGAAAATTTCTGTTTTGTTGTCGTCTGTCTGACAGA
ATTGTCTTTCTATTCTTTACTTTGCCCGCACCCTACTGGGTCTTTTTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTCTTCAGGAAAACAGAATTTCCTTCTTC
CCAGTCAGTTGTGGGGTTTCTCGTGTAGAAGATTACACAACAGCAAGTAA
AGTGGCAACTAGAGTTCATGTTTTTGATTTTCATTGTTTAAAGAGTTGTG
GGCTCATCATTCTAAAACGTCCACACAGAANAATACATTTTTTATTAGAT
ACTTTCTTTACTTACATATAAAATTTTATCCCCTTTCCTAGTTTCCCCTC
TGAAAACCCCCTATCGCTTCCTCCCCACACCCCCACTGCATGCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_f19.g1 MSMg01no288_f19.g1 CHROMAT_FILE:
MSMg01no288_f19.g1 PHD_FILE: MSMg01no288_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:25 2005
         (290 letters)



>mm_chr5_51774481_51775170
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttggcattcagggtttctgcctcattctccactttctttcctgtgtccacagacttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 490 tgttggcattcagggtttctgcctcattctccactttctttcctgtgtttacagacttgc 431

                                                                       
Query: 61  tattttgactatattctacctggggattctagaaaagatcaccatgtctcctgaagctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tattttgactatattctacctggggattctagaaaagatcaccatgtctcctgaagctgt 371

                                                                       
Query: 121 aaacttcatccccctctgttctttgatttctgtgctttttctcttcttgttcctaaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaacttcatccccctctgttctttgatttctgtgctttttctcttcttgttcctaaagcc 311

                                                                       
Query: 181 attagatgctcagttaattggttttattgaactagtctatcaaaataaagtttcactcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 attagatgctcagttaattggttttattgaactagtctatcaaaataaagtttcactcag 251

                                                             
Query: 241 agaaaatttctgttttgttgtcgtctgtctgacagaattgtctttctatt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agaaaatttctgttttgttgtcgtctgtctgacagaattgtctttctatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)