Query= MSMg01no288_l08.b1 MSMg01no288_l08.b1 CHROMAT_FILE:
MSMg01no288_l08.b1 PHD_FILE: MSMg01no288_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:51 2005
(324 letters)
>mm_chr5_44096763_44097486
Length = 724
Score = 574 bits (297), Expect = e-168
Identities = 315/321 (98%)
Strand = Plus / Plus
Query: 4 ggaattcactttacttatgactttgttttatatgtaagcataggtctcatttatgaaact 63
||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||
Sbjct: 204 ggaattcactttacttaagattttgttttatatgtaagcataggttttatttatgaaact 263
Query: 64 ggaggagactgtagtccaccaaggattggactcttcgcctgcccactcccttgtcctttc 123
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaggagactgtagtccaaaaaggattggactcttcgcctgcccactcccttgtcctttc 323
Query: 124 agtgcctgtcaatggcttccccattagttccatgtcacaatatttgattatagcaagctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtgcctgtcaatggcttccccattagttccatgtcacaatatttgattatagcaagctc 383
Query: 184 cttaagacctgtcactgtatgggtcaaatggaatgatataatgttgtcaccgtgtcattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttaagacctgtcactgtatgggtcaaatggaatgatataatgttgtcaccgtgtcattt 443
Query: 244 gtaatgcttggtgtccatcctgttaacaaatgcacagtgatccttagtaatcaaacactg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaatgcttggtgtccatcctgttaacaaatgcacagtgatccttagtaatcaaacactg 503
Query: 304 actacagttgtgggcggtctc 324
|||||||||||||||||||||
Sbjct: 504 actacagttgtgggcggtctc 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_l08.g1 MSMg01no288_l08.g1 CHROMAT_FILE:
MSMg01no288_l08.g1 PHD_FILE: MSMg01no288_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:51 2005
(297 letters)
>mm_chr5_44261214_44261916
Length = 703
Score = 464 bits (240), Expect = e-135
Identities = 281/302 (93%), Gaps = 14/302 (4%)
Strand = Plus / Minus
Query: 1 catgatttctgcatgtgtactgtggaacaggcactcgctcacttacgagcgtgtgcgtgt 60
||||||||||||| |||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 561 catgatttctgcacgtgtactgtggaacaggcactcacgcacttacgagcgt----gtgt 506
Query: 61 gcgcgcgcacacacacacacatgtacacacacagagtaaatatatatacttttattagtt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ----gcacacacacacacacatgtacacacacagagtaaatatatatacttttattagtt 450
Query: 121 aatcctgttatttttagattgattattatttgataaacacaaataattaattcttgctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatcctgttatttttagattgattattatttgataaacacaaataattaattcttgctga 390
Query: 181 atgcacacatatacacatgagtggataggttgaagaagtgcttaccatctacaccacatg 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 389 atgcacacatatacacatgagtggataggttgaagaagtgcttaccgtctacaccacatg 330
Query: 241 gttagtgctaagcacacatcatgccaatgccatg------gtttgctaagcacagaaaat 294
|||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 329 gttaatgctaagcacacatcatgccagtgccatgcatctggtttgctaagcacagaaaat 270
Query: 295 tt 296
||
Sbjct: 269 tt 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 703
Length adjustment: 9
Effective length of query: 288
Effective length of database: 694
Effective search space: 199872
Effective search space used: 199872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
