BAC Information

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BAC

Clone NameMSMg01-289A13
Chromosome5 (Build37)
Map Location 81,302,974 - 81,342,025
singlet/doubletdoublet
Overlap geneLOC100039506, LOC100039384
Upstream genenone
Downstream geneLphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289A13.T7 (MSMg01no289_a13.b1)MSMg01-289A13.TJ (MSMg01no289_a13.g1)
ACCAG418699AG418700
length743742
length of high quality
(start - end)		700 (44 - 743)584 (129 - 712)
definitionCHROMAT_FILE: MSMg01no289_a13.b1 PHD_FILE: MSMg01no289_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:16 2005CHROMAT_FILE: MSMg01no289_a13.g1 PHD_FILE: MSMg01no289_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,302,974 - 81,303,669)(81,341,623 - 81,342,025)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACACTCAAAAAATAACTCACTACCAGAAAACATCAAATTACATGTGT
TTTCTCTATTACTAGAGAATAACAGAGAGGGATAGCATAACACGAATCTC
ACTGGAAGGCAAGGGCTTGTCTTCCTCCAATATTATAGTCTGTAGATAAC
AGTATAGTGGATTAATGTTTTTCTTTTTAAGGTATGTTTTTAATCGTCAG
GAGTGGAGTCAAGTGTGTTTTTATAATTTTCTGTCTTTATAAGAACTATC
TAAGATGCTCTTTATTTCTTGAATTGTTGTAATTCACAATAAATTAATTC
TAATTCAGTAGTTCTAGCTATGCCCTAGGAAATTACACTTGAGAAATTAC
CAGTGATTCCAATGACATTCCAAGACTACATTTGATGAAAGTTCTATTAG
CCTATTCCTTTTATTGATATTTCTGCATATTTTAAAGTTATCCAGCTACA
TACTTTTCCAAAATTTCTTAGAAATATATCCATTTTTATGATGGATCATT
CCTAATATATCATTTGTTTAACAGTTTTTAAACATTTATGTTTCCCTTTA
GGAAAACAAAAAAAAATCATATTTAATTGGGCTGTAAAATTGGATTCACA
TCTACTAGAACTCACAGAAAACAATGTTTCTGTGTTTTATTTACCTTTTT
ATACGTTTAGAATCACCAATTCTTATTTCATTCCCACATTTTA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTAAGACAAAGCTAGGGCTCCATCAAA
CTATCAAAGAGTGGTTTTCCTCCGCTTGAGGAATGTGCTTGAAAAAGAAG
ACATAGGAAGATGTCATCTATTGCTCAATAGGAAAAAGAGCTAGTGTTCT
TTGTGTGTGGAGAAACAGACATAACTGTACAAGAAGAAAACATTGGACAG
TAGAGGAAAGAAATATGGGTTGTTACAACTTTCTTTTCTTTTCTTCTATT
TTAGTCTTCATTTTTTATTTAATTCTTTTTTAAATTAATTAATTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCCGCAATACATCTCCTGGGCA
TATATCCAGAAGATGCCCCAACCGGTAAGAAGAACACATGCTCCACTATG
TTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAATGAATTTATAAAATTCCTAGCCAAATG
AATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACACTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAG
AATACCCAAGATATAAGATACAACTTGCCAAACGCATGANAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_a13.b1 MSMg01no289_a13.b1 CHROMAT_FILE:
MSMg01no289_a13.b1 PHD_FILE: MSMg01no289_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:16 2005
         (700 letters)



>mm_chr5_81302770_81303869
          Length = 1100

 Score = 1323 bits (684), Expect = 0.0
 Identities = 693/696 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacactcaaaaaataactcactaccagaaaacatcaaattacatgtgttttctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacactcaaaaaataactcactaccagaaaacatcaaattacatgtgttttctct 264

                                                                       
Query: 65  attactagagaataacagagagggatagcataacacgaatctcactggaaggcaagggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attactagagaataacagagagggatagcataacacgaatctcactggaaggcaagggct 324

                                                                       
Query: 125 tgtcttcctccaatattatagtctgtagataacagtatagtggattaatgtttttctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtcttcctccaatattatagtctgtagataacagtatagtggattaatgtttttctttt 384

                                                                       
Query: 185 taaggtatgtttttaatcgtcaggagtggagtcaagtgtgtttttataattttctgtctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaggtatgtttttaatcgtcaggagtggagtcaagtgtgtttttataattttctgtctt 444

                                                                       
Query: 245 tataagaactatctaagatgctctttatttcttgaattgttgtaattcacaataaattaa 304
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tataagaactatctaagatgcactttatttcttgagttgttgtaattcacaataaattaa 504

                                                                       
Query: 305 ttctaattcagtagttctagctatgccctaggaaattacacttgagaaattaccagtgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctaattcagtagttctagctatgccctaggaaattacacttgagaaattaccagtgat 564

                                                                       
Query: 365 tccaatgacattccaagactacatttgatgaaagttctattagcctattccttttattga 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccaatgatattccaagactacatttgatgaaagttctattagcctattccttttattga 624

                                                                       
Query: 425 tatttctgcatattttaaagttatccagctacatacttttccaaaatttcttagaaatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatttctgcatattttaaagttatccagctacatacttttccaaaatttcttagaaatat 684

                                                                       
Query: 485 atccatttttatgatggatcattcctaatatatcatttgtttaacagtttttaaacattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atccatttttatgatggatcattcctaatatatcatttgtttaacagtttttaaacattt 744

                                                                       
Query: 545 atgtttccctttaggaaaacaaaaaaaaatcatatttaattgggctgtaaaattggattc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgtttccctttaggaaaacaaaaaaaaatcatatttaattgggctgtaaaattggattc 804

                                                                       
Query: 605 acatctactagaactcacagaaaacaatgtttctgtgttttatttacctttttatacgtt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acatctactagaactcacagaaaacaatgtttctgtgttttatttacctttttatacgtt 864

                                               
Query: 665 tagaatcaccaattcttatttcattcccacatttta 700
           ||||||||||||||||||||||||||||||||||||
Sbjct: 865 tagaatcaccaattcttatttcattcccacatttta 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no289_a13.g1 MSMg01no289_a13.g1 CHROMAT_FILE:
MSMg01no289_a13.g1 PHD_FILE: MSMg01no289_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:16 2005
         (584 letters)



>mm_chr5_81341623_81342606
          Length = 984

 Score =  687 bits (355), Expect = 0.0
 Identities = 391/403 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaatgtgcttgaaaaagaagacataggaagatgtcatctattgctcaataggaaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aggaatgtgcttgaaaaagaagacataggaagatgtcatctattgctcaataggaaaaag 344

                                                                       
Query: 61  agctagtgttctttgtgtgtggagaaacagacataactgtacaagaagaaaacattggac 120
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 343 agctagtgttctttgtgtgtggagtaacagacataactgtaaaagaagaaaacattggac 284

                                                                       
Query: 121 agtagaggaaagaaatatgggttgttacaactttcttttcttttcttctattttagtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agtagaggaaagaaatatgggttgttacaactttcttttcttttcttctattttagtctt 224

                                                                       
Query: 181 cattttttatttaattcttttttaaattaattaattcctcagaaaattggacatagtact 240
           | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctttttttatttaactctttttttaattaattaattcctcagaaaattggacatagtact 164

                                                                       
Query: 241 accggaggatcccgcaatacatctcctgggcatatatccagaagatgccccaaccggtaa 300
           || ||||||||| ||||||| ||||||||||||||||||||||||||  |||||||||||
Sbjct: 163 actggaggatcctgcaatacctctcctgggcatatatccagaagatgttccaaccggtaa 104

                                                                       
Query: 301 gaagaacacatgctccactatgttcatagcagccttgtttataatagccagaagctggaa 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 103 gaagaacacatgctccactatgttcatagcagccttgttcataatagccagaagctggaa 44

                                                      
Query: 361 agaacccagatgcccctcaacagaggaatggatacagaaaatg 403
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 43  agaatccagatgcccctcaacagaggaatggatacagaaaatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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