BAC Information

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BAC

Clone NameMSMg01-289E11
Chromosome5 (Build37)
Map Location 78,479,279 - 78,479,512
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289E11.T7 (MSMg01no289_e11.b1)MSMg01-289E11.TJ (MSMg01no289_e11.g1)
ACCAG418875AG418876
length741742
length of high quality
(start - end)
315 (46 - 360)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no289_e11.b1 PHD_FILE: MSMg01no289_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:33 2005CHROMAT_FILE: MSMg01no289_e11.g1 PHD_FILE: MSMg01no289_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGACTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGCTGGTCTT
TTTGTCTTATTGAAGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATTTGTTTCACCGCCTCTGGTTTTCTGTGAAGTTCCTTGAT
CCACTTAGATTCCCCCCCACCACAAAGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGTT
CTACTTGTCTGTCTCTATACCAGTACCCTGCTAGTTTTTATCACCATTGC
TCTGTTCTAAAGCTTTAGGCCTTGGCCTGGTGTTTCCGTCCTAAGTTCTT
TTTATCCTTTTTAATACTATTTGCTATTCCTACGTCTTTTG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGGATCTTTGACATTCAGATAGCC
TGTCTGTAATCTCATTTACCCCTGGTTATATCTGCCCTGTAGGATTGTTA
TGAGAATGTATGACCTGAGTCATAGTAAGAACCTAACACTGTAGCTGTCA
TATACCATGCATCTAATTAACTGGAGTTGCTTTTACACCCCTTTTGTTAA
CTCCAGACCCCATTTTCACCCCTTCTCACTAAGTAGCTTTTTTTTTCTTG
ATTCCCATAATTCAACCTTCTGATTCATTTAATTGCCAAATAGATGGCTA
AAGTGCTTTTTTTATGTCCCCCCCCCCCTGAATGTTCAGCTCATGTTAAA
ATAACAGGCACCCCCCCCCACTCCAGAACACACCTTGATTAAGGCACTTG
ATCCATGTGCCGTCCTGCTGGCTGATGACCAAAAGCACGGTGGAGCAGTG
TGAGGTGACAGACTAGGTTGACTCAGAAGAGGTTGGTCCTCCAAGGGTTT
GTTTTGTCATCCACAGTTAGTAATTTCAGGTTTAATTCATTGTAAGAATT
TGTTTGATATCATAACATATTAATTTCAAGTGTTATATCTACATGCATTA
ACAAGTGTATTTTGAAACTCAATTAAGATTCATCATTTTGACCAATGAAT
GTGAATTGATAACCTACAAATGTCATGAATGGAGGCACATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_e11.g1 MSMg01no289_e11.g1 CHROMAT_FILE:
MSMg01no289_e11.g1 PHD_FILE: MSMg01no289_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:33 2005
         (234 letters)



>mm_chr5_78479079_78479714
          Length = 636

 Score =  433 bits (224), Expect = e-126
 Identities = 231/234 (98%), Gaps = 2/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatatctgccctgtaggattgttatgagaatgtatgacctgagtcatagtaagaaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatatctgccctgtaggattgttatgagaatgtatgacctgagtcatagtaagaaccta 260

                                                                       
Query: 61  acactgtagctgtcatataccatgcatctaattaac--tggagttgcttttacacccctt 118
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 261 acactgtagctgtcatataccatgcatctaattaacactggagttgcttttacacccctt 320

                                                                       
Query: 119 ttgttaactccagaccccattttcaccccttctcactaagtagctttttttttcttgatt 178
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtcaactccagaccccattttcaccccttctcactaagtagctttttttttcttgatt 380

                                                                 
Query: 179 cccataattcaaccttctgattcatttaattgccaaatagatggctaaagtgct 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccataattcaaccttctgattcatttaattgccaaatagatggctaaagtgct 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 636
Length adjustment: 9
Effective length of query: 225
Effective length of database: 627
Effective search space:   141075
Effective search space used:   141075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)