BAC Information

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BAC

Clone NameMSMg01-289J12
Chromosome5 (Build37)
Map Location 82,159,227 - 82,159,514
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289J12.T7 (MSMg01no289_j12.b1)MSMg01-289J12.TJ (MSMg01no289_j12.g1)
ACCAG419104AG419105
length733728
length of high quality
(start - end)
318 (43 - 360)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no289_j12.b1 PHD_FILE: MSMg01no289_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:56 2005CHROMAT_FILE: MSMg01no289_j12.g1 PHD_FILE: MSMg01no289_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATGGTCCTTTTCTTCCCTTTGGATGTCTGGACTCAGATGCACACCAG
GTGAAAAAGGATGAAGCTAAAGCCCCTAACGGGTGGGTCAGCAGAATTCT
GGTCCAGCACTACCGGTGTGATGCTTTGATAAACAGCTCTCTTGGATGAT
AGTCAAAGAAACGGCTTGCATACTTTATTCGGTGTAAACAAGGAGTATAT
AAAATTAGAAGAGTGGGAAGAGGTTCCTCTTAGGGGGATGCTTCATTGGC
TGAGGTTTAAGGTTCTGGGGGTACCTCATTTTCATGGAAAGGCATTTCAG
GAAGTTGAATCTGTATATTCCCCCCCCCCCTTGACATTTCCTCAGGTAGA
CTGTGGGGGTTGCCCCCCCCAGTTAGAATAAAGAAGAGGAAACCCTGATG
GGAGAGGGAGTCCTCCAGTTTAGCTGAACTCAGGGGAGCTGACTGGACAT
GGTAGACTTTTAACTTAAGGAACAGGATTTCCTAGCAATGAATAGTTTTC
TCTTTTTTTTTTAAACACACACACACATCTATGTACATATATGTATATTA
TGTATTTTAAAAAACTAAACAGGAGTGGTGGATCAGGCATCTCGGTTGTA
AACTCTGGAAACACCCTTAAAATTATCCGAAAAAAGGGACTCCCCCCCCC
AGAATTATTCAGGGTATACCCACCTTTTTTGCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGAACCAAATTTCTGCCTAGGATCA
TTTTGTTCATTAAAGATTAAAGTATTATAAAGGAGCTATTATTTTGATAA
TGGCTGACATGAATGTGTCGTATTTCCATTTGGACTTAATTAAGATATCT
TCTTAAATAAAATTAAAATGAATGAATTTAATTAGTTAATTTTGTTGGTG
GTTCTGAGATTAAACTTGGCTTGCTGCATACGAAGCAACCACCCTATCAC
TGAGCTATATCCCTAGCCAGGGCATTGGATTTTGACTACAGTTTTAGGCT
TTCTGCATTCTGTTATTTGGCACCCCACCCCCCCTATCTTCATGGTTCCT
GTAATTGTTCACCGCCCCCCCCACTTTATAACAGATATATATACATTTTA
TTTATTCCATCTCATTTTCCCTGACTTGCTAACTATGTAACTTTATTTTC
TTTATTGGGGAATGTTGCAGCAAAAGAAAATTTTGGAAGATATCAGANAA
ACTTCAGTTAAGAGATTCTTGTAAGGGCTGGAGAGGTGGCTGAGAGGTTT
AGAGCACTGACTGTTCTTCCAGAGNACCCAGATTCAGTTCCCAGTGTCCA
CGTGGCAGCTCCCAACTGTCTGTAGCTCAATTCCTGTGAATCCCACTCCC
TCACTCACGTATATGTAGGCCAACATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_j12.g1 MSMg01no289_j12.g1 CHROMAT_FILE:
MSMg01no289_j12.g1 PHD_FILE: MSMg01no289_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:56 2005
         (288 letters)



>mm_chr5_82159027_82159714
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaccaaatttctgcctaggatcattttgttcattaaagattaaagtattataaagg 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaaccaaatttctgcctagggtcattttgttcattaaagattaaagtattataaagg 260

                                                                       
Query: 61  agctattattttgataatggctgacatgaatgtgtcgtatttccatttggacttaattaa 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agctattattttgataatggctgacatgaatgtgtcatatttccatttggacttaattaa 320

                                                                       
Query: 121 gatatcttcttaaataaaattaaaatgaatgaatttaattagttaattttgttggtggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatcttcttaaataaaattaaaatgaatgaatttaattagttaattttgttggtggtt 380

                                                                       
Query: 181 ctgagattaaacttggcttgctgcatacgaagcaaccaccctatcactgagctatatccc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagattgaacttggcttgctgcatacgaagcaaccaccctatcactgagctatatccc 440

                                                           
Query: 241 tagccagggcattggattttgactacagttttaggctttctgcattct 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagccagggcattggattttgactacagttttaggctttctgcattct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)