BAC Information

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BAC

Clone NameMSMg01-290C10
Chromosome5 (Build37)
Map Location 3,596,716 - 3,597,349
singlet/doubletsinglet
Overlap genePex1
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik
Downstream geneGatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290C10.T7 (MSMg01no290_c10.b1)MSMg01-290C10.TJ (MSMg01no290_c10.g1)
ACCAG419511AG419512
length736737
length of high quality
(start - end)
300 (384 - 683)635 (77 - 711)
definitionCHROMAT_FILE: MSMg01no290_c10.b1 PHD_FILE: MSMg01no290_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:37 2005CHROMAT_FILE: MSMg01no290_c10.g1 PHD_FILE: MSMg01no290_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTACAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATTATGCCAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
GAAATTGGACGTAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCTTAAGTTGCCCCCCCTCCCCCCCACGGTCACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAAAAAAAAACTGGAAAGAACCCAGAT
GCCCCTCAACATAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATATATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACC
TAGAATACCCAAGATATAAGATACAATTTCCTAAACACATGACACTCAAG
AAAAATGAAGACTGAAGCGTGGACACTATGCCCCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTGCACCCCTTTAACTCGGTT
AAAGCAAGCTGAGCATGCTTGGCCCCTGCCCCAGCAGTCAGAAGCGGCCC
TCACTCAAGGATGGAAAGTTCTAGAGAGCTCTTACAGGTTTGCTTACAGG
TTGCTAAAGCATTATCCTGCCAACGAGTTGCCGGTGCAGCGATAGAGGTG
TTGAGTGGCAGACTTGGTTTGTAGATTACCAAGGTTTCCAACCTGTGCGA
AAGGTTAATAAAAGGATAGATAGCTCTCCCTGCTCCGGAGGACTTCGAAC
ATAGAAAGAATATGTGCGGCGAGGGAGGTGGGGCGGGGTGACAAGGTGAT
GGAATTATTCACACCCCACACTTTCACCTCGGTAGCTAGGATTACTTGGA
CCTCAGCGAGCTGTCTGGATTCTGTCATTATGGTGTTTCAAGGCTATTAA
CCATCGGTGGAAATACAGCATCCATGTTTTCCTAAGAGTGAGCAGAAATA
GACTCTCTTAGTTTGAGTGTATTCATGGGGTTAGAGTATTTGAAATCTAA
AATCCTAGATGCATGGTACCTGAACACTGGGTCATAAAAAAAATATACAA
GAGTTTGAAATGACTTCAAGTATTCTACCTTTATTTCCTCTTTGCTACAT
TTATCTTGCTCTTACAGTCCACCTATCAGAACACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_c10.g1 MSMg01no290_c10.g1 CHROMAT_FILE:
MSMg01no290_c10.g1 PHD_FILE: MSMg01no290_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:37 2005
         (635 letters)



>mm_chr5_3596516_3597550
          Length = 1035

 Score = 1174 bits (607), Expect = 0.0
 Identities = 627/639 (98%), Gaps = 10/639 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtgcacccctttaactcggttaaagcaagctgagcatgc-----ttggcccctgccc 55
           ||||||||||||||||||||||||||||||||||||||||||     ||     ||||||
Sbjct: 201 ctagtgcacccctttaactcggttaaagcaagctgagcatgcaagggtt-----ctgccc 255

                                                                       
Query: 56  cagcagtcagaagcggccctcactcaaggatggaaagttctagagagctcttacaggttt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagcagtcagaagcggccctcactcaaggatggaaagttctagagagctcttacaggttt 315

                                                                       
Query: 116 gcttacaggttgctaaagcattatcctgccaacgagttgccggtgcagcgatagaggtgt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcttacaggttgctaaagcattatcctgccaacgagttgccggtgcagcgatagaggtgt 375

                                                                       
Query: 176 tgagtggcagacttggtttgtagattaccaaggtttccaacctgtgcgaaaggttaataa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgagtggcagacttggtttgtagattaccaaggtttccaacctgtgcgaaaggttaataa 435

                                                                       
Query: 236 aaggatagatagctctccctgctccggaggacttcgaacatagaaagaatatgtgcggcg 295
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 436 aaggatagatagctctccctgctccggaggacttcgaacatagcaagaatatgtgcggcg 495

                                                                       
Query: 296 agggaggtggggcggggtgacaaggtgatggaattattcacaccccacactttcacctcg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agggaggtggggcggggtgacaaggtgatggaattattcacaccccacactttcacctcg 555

                                                                       
Query: 356 gtagctaggattacttggacctcagcgagctgtctggattctgtcattatggtgtttcaa 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtagctaggattacttggacctcagcgagctgtctggattctgtcattatggtgtttcaa 615

                                                                       
Query: 416 ggctattaaccatcggtggaaatacagcatccatgttttcctaagagtgagcagaaatag 475
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 616 ggctattaaccatcggtggaaatacagcatccatattttcctaagagtgagcagaaatag 675

                                                                       
Query: 476 actctcttagtttgagtgtattcatggggttagagtatttgaaatctaaaatcctagatg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 actctcttagtttgagtgtattcatggggttagagtatttgaaatctaaaatcctagatg 735

                                                                       
Query: 536 catggtacctgaacactgggtcataaaaaaaatatacaagagtttgaaatgacttcaagt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 catggtacctgaacactgggtcataaaaaaaatatacaagagtttgaaatgacttcaagt 795

                                                  
Query: 596 attctacctttatttcctctttgctacatttatcttgct 634
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 796 attctacctttatttcctctttgctacatttatcttgct 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)