Query= MSMg01no290_l06.b1 MSMg01no290_l06.b1 CHROMAT_FILE:
MSMg01no290_l06.b1 PHD_FILE: MSMg01no290_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:20 2005
(320 letters)
>mm_chr5_76248314_76249033
Length = 720
Score = 511 bits (264), Expect = e-149
Identities = 296/316 (93%), Gaps = 15/316 (4%)
Strand = Plus / Plus
Query: 5 gaattctacatcttcatctgtaggcctctaggagaatactgactcccaagcaggtaggac 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 220 gaattctacatcttcatctgtaggcctctaggagaatactgactcccaggcaggtaggac 279
Query: 65 aagggtcttaaagcccatgcccacagtggcacagccacctcaacaaagccacctggctcc 124
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 280 aagggtcttaaagcccatgcccacagtgacacacccacctcaacaaagccacctggctcc 339
Query: 125 aaatagtgccactccctgggacaagcagatacaaaccatcacacctgggcatcaacagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaatagtgccactccctgggacaagcagatacaaaccatcacacctgggcatcaacagtg 399
Query: 185 cacatctgtatgttcaaccgctacagaaccacattcactgaacctgcttgaaaggttctt 244
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 400 cacatctgtatgttca---------------cattcactgaacctgcttgaaaggttctt 444
Query: 245 gacaaaggtcctttccccaagcatccaggtttggatggttctgacctctttccagcactt 304
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 445 gacaaaggtcctttccccaagcatccaggtttggatggttttgacctcttttcagcactt 504
Query: 305 acggcgctgattggtt 320
||||||||||||||||
Sbjct: 505 acggcgctgattggtt 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_l06.g1 MSMg01no290_l06.g1 CHROMAT_FILE:
MSMg01no290_l06.g1 PHD_FILE: MSMg01no290_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:20 2005
(294 letters)
>mm_chr5_76419910_76420603
Length = 694
Score = 543 bits (281), Expect = e-159
Identities = 290/293 (98%)
Strand = Plus / Minus
Query: 1 tcttcacacaccctggcagagaagatcagctgatttcttccatagctttttcctggctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcttcacacaccctggcagagaagatcagctgatttcttccatagctttttcctggctta 277
Query: 61 aaaaaaataaaaacaaaaccaaaaagatggcttaataaatgtggctttaccttttatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaaaaataaaaacaaaaccaaaaagatggcttaataaatgtggctttaccttttatagt 217
Query: 121 aaaggtactgagaggtgggcgtggtggtgtaaagttgtagtccccagcattttggagtct 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 216 aaaggtactgagaggtgggcgtggtggtgtaaggttgtagtccccagcattttggagtct 157
Query: 181 gaggcctggtgatctcacagttggggccggtcttagctatataggaagtatctgccacaa 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaggcctggtgatctcacagttgaggccggtcttagctatataggaagtatctgccacaa 97
Query: 241 acgaacttttcatgctctctctaggttccattgttgctactgctgaagcttgc 293
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 96 acgaacttttcatgctttctctaggttccattgttgctactgctgaagcttgc 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
