TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG
CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT
CTCCTCAGAGATTACCGGCTCTCCACATCTCCCCCTTTTTATTTTATTAA
AATTTGAGGCTGGTCTAGTCCTGTGTAATTATGCCCATCTGCTGTGGCTC
CTGTCTTAGGTCGTTCCTCCAATGTCACAGCCTTTCCTGTCATAGGGTAA
CCCTATCGCCACCGGGCCCCGTGTCTTAGGTTGATCTGTGCATGAGGAAA
GTTGCCCGTCCCTGGATACCGCAGTGCTATGTGACATTAACTACTAAATG
ACCTAGGGCGAACTCTATAAAAGAGGCCAGCCACCAATGTCAATTAATCT
TTGAGCATAGATAGCCAGATTTCAGGGGAGGCCCCTTGCTCGATGGCAGC
AAGTGCTTGAGTTATCACAACCTTGTCACGTGTTTGTTGGGTTCTGAGCT
TGCAAACCAACCAGAGCATGACCACAAGTCCACAGCAGGTGGCAACGCCA
AATAAACCTACCCCCACCCATTCCTTAAAATAAGAAAAGGCAGATGAAAT
CCAGGAGGAGAGGCCCTCTGGTCATGACAGGTCCACTCGTGTCGAGTTGA
TCTTTAGAACGGCCGCTCTCAGGGCCTCAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGCTCTATGGTGATAATATTA
GCTGGCAAGACTTTGAGAAAGTGACAGGTATCTGATCAGATAAATAGAAC
CAGTATTCTTAAAAGATAGACAAAATGCAGCTTATTGATCTCTTCTACTA
TATGAGGATTTTAAAGAGGAACAGTGAGCATGTTTACATAACAGAAGAAC
ACTTTAAAAAAGTGGTTTAGCACTGAACTTTCAGTTTAATATAAATATCT
AAAGCCATTTATAAATACTTCTTTTAATATTCCATTTGCTGTACCTTTCT
TTGTCAACTTACTGTTTAGTGAAACAGCCCCCATCTTGTTCTTTCCACAG
TGATGTTATTTGTACAATGAACTTACAGTTGTAAACTGGGATCAGTGCAC
AATAATTGCAGCATAGGATTCTGATCATAGTTTTATCTCAAGTGTCTTAT
CATGGGATCATCTAACTTGACCAACATCTCATTTTTTTTTTTGCTTAGCA
TGATGTAGGAACTAACAAAAGAGACTATAAAATGAGACTTTGAACTCTTC
AAACTGTCAAGCAAGTGTCTGCAAAATCATCCCTGCCTTTTTGCTGTGGG
CAGTTGTAGAGAGAGCTCAGATTATCCCAGAATTTATGTAATTATACTCG
ATTAGAGATTACTATTGCACAATGT

Query= MSMg01no290_p03.g1 MSMg01no290_p03.g1 CHROMAT_FILE:
MSMg01no290_p03.g1 PHD_FILE: MSMg01no290_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:37 2005
         (644 letters)



>mm_chr5_71757909_71758946
          Length = 1038

 Score = 1091 bits (564), Expect = 0.0
 Identities = 622/644 (96%), Gaps = 6/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagctctatggtgataatattagctggcaagactttgagaaagtgacaggtatctgat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 838 ctaagctctatggtgataatattagctggcaggactttgagaaagtgacaggtatctgat 779

                                                                       
Query: 61  cagataaatagaaccagtattcttaaaagatagacaaaatgcagcttattgatctcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cagataaatagaaccagtattcttaaaagatagacaaaatgcagcttattgatctcttct 719

                                                                       
Query: 121 actatatgaggattttaaagaggaacagtgagcatgtttacataacagaagaacacttta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 718 actatatgaggattttaaagaggaacagtgagcatgtttacataacagaagagcacttt- 660

                                                                       
Query: 181 aaaaagtggtttagcactgaactttcagtttaatataaatatctaaagccatttataaat 240
            |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 659 -aaaattggtttagcactgagctttcagtttaatataaatatctaaagtcatttataaat 601

                                                                       
Query: 241 acttcttttaatattccatttgctgtacctttctttgtcaacttactgtttagtgaaaca 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acttcttttaatattcaatttgctgtacctttctttgtcaacttactgtttagtgaaaca 541

                                                                       
Query: 301 gcccccatcttgttctttccacagtgatgttatttgtacaatgaacttacagttgtaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 540 gcccccatcttgttctttccacagtgatgttatttgtacaatgaatttacagttgtaaac 481

                                                                       
Query: 361 tgggatcagtgcacaataattgcagcataggattctgatcatagttttatctcaagtgtc 420
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 480 tgggatcagtgcacaataattgcagcatatgattctgatcatagtcttatctcaagtgtc 421

                                                                       
Query: 421 ttatcatgggatcatctaacttgaccaacatctcatttttttttttgcttagcatgatgt 480
           ||||||||||||||||||||||||||||||||||||| ||||    ||| ||||| ||||
Sbjct: 420 ttatcatgggatcatctaacttgaccaacatctcattgtttt----gctaagcatcatgt 365

                                                                       
Query: 481 aggaactaacaaaagagactataaaatgagactttgaactcttcaaactgtcaagcaagt 540
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 364 aggaactaacaaaagagactataaaatgagactttggactcttcaaattgtcaagcaagt 305

                                                                       
Query: 541 gtctgcaaaatcatccctgcctttttgctgtgggcagttgtagagagagctcagattatc 600
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 304 gtctgcaaaatcatctctgcctttttgctgtgggcagttgtagagaaagctcagattatc 245

                                                       
Query: 601 ccagaatttatgtaattatactcgattagagattactattgcac 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccagaatttatgtaattatactcgattagagattactattgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1038
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1028
Effective search space:   651752
Effective search space used:   651752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)