BAC Information

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BAC

Clone NameMSMg01-291I08
Chromosome5 (Build37)
Map Location 104,864,257 - 104,864,548
singlet/doubletsinglet
Overlap genenone
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe
Downstream geneSpp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291I08.T7 (MSMg01no291_i08.b1)MSMg01-291I08.TJ (MSMg01no291_i08.g1)
ACCAG420495AG420496
length741745
length of high quality
(start - end)
317 (45 - 361)308 (427 - 734)
definitionCHROMAT_FILE: MSMg01no291_i08.b1 PHD_FILE: MSMg01no291_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:20 2005CHROMAT_FILE: MSMg01no291_i08.g1 PHD_FILE: MSMg01no291_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAGGGTGAGTCCAGAGAACATTCTTTTAACAGTCGTATTTGTTAG
TCAGACTCGTGCTGTTCTGGTCTTTTTGAATAAGCTGGTCAGGTACATTG
CAGGTTTCCCGGTATTTTCAAAGTCAGTTGGATGTAGAAGTTAAAATAAA
TCTAGTTGGTCCTCTAAAGGAGAGAGAGATCTGCTAGTAATCTCTCTCTC
TCTCTCCCTCTCTTTCTCTCTTTCTCTTTCTCTCCCTCTCTCTCTTTCTC
TCTCTCCCTCTCTCTCTCCCTCCTCTCTCTCTCCCTCCTCTCTCTTCCTC
TCTCTCTCTTTTTTCTCTCTCTCTCTCCCTCTCCCCCCTTCTCTCCCTCT
CTCCTCTCTCCCCCCCTCACCTGTCACACACACATTGTAAAGTTCTATGT
ATCTTTGGAACAAATGTCTGCATCATTTTAAAGTGGCTGGATGACTGTGG
AGACCAGTAAAGGAGGATCCTCTATATTAATATAAACCAGATACAGTTAT
TTTTAGAAAACTGTCTCACTTCAAAAGAGAACCTTCCTTAATTTCTCGCT
TCTGCACTTGGCTTTTACAGTTTTCACTAAGGTCCCTGTGTGATAACACA
GACTCATCAACATGCACAGAAAAGCTGTTGCCTGCTCTCAGCGTTTTATT
TTTATTATTATTATTATTATTATTATTATTAGTCCAAATAG
TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATAGGAAGACTAACTGAGTCAAATAA
CTTTTATTGTTCTTGAGCCTGAACCCTCAACTAAAAAACATACATGGGCT
GGACCTAGGCCTCCATGCTCATTTCTCAGAGAGGTGCAGCTTTGCCATCT
TGTGGGTCCTAAACAACTGGAAATGGGGATATGCAAACAGAAGTTGCATA
TATATAGGATTGGTTCTTGTAGCCAAATGCCTTGTCTGACCTCAGTGCAA
GAGAAAGTGTGTATCCTTTCAGTGACTAGTTGTCAGATTGGGAGATAAAC
AAATATTTTTCCACACCCCCACAACAAAATGGGATGAGGGCATGGGGGAA
GAATTATCCCAACGGGTGACAAAAAGGGGCAGTAAGCATGAGGTAAATTG
AATAACTTAAAAAGATAAAATTCAGGTTAAAAAGAGGAAAAATATAATGA
GCACACTGGTTAGAATGGCTCAGGCATTTAATCCCAGCACTAGGTAGACA
AAAACATAGCATATATCATGAAGTTGGATGTTAGCCTGGTCTATGTGATC
AGTTCTAGGACAGCCAGAGATATATATTAAGAACTTGTATGCCATGCAAA
GTCAACCAAACAAACCACAAAGAAGTAAAGAATGCAGAGGTCATTACTAA
AGTGCTGGAAAAGAATATACATTCACCACACTGTCACTGTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_i08.b1 MSMg01no291_i08.b1 CHROMAT_FILE:
MSMg01no291_i08.b1 PHD_FILE: MSMg01no291_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:20 2005
         (317 letters)



>mm_chr5_104864053_104864771
          Length = 719

 Score =  480 bits (248), Expect = e-140
 Identities = 287/312 (91%), Gaps = 22/312 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgagggtgagtccagagaacattcttttaacagtcgtatttgttagtcagactc 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattctgagggtgagtccagagaacattctttcaacagtcgtatttgttagtcagactc 264

                                                                       
Query: 65  gtgctgttctggtctttttgaataagctggtcaggtacattgcaggtttcccggtatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgctgttctggtctttttgaataagctggtcaggtacattgcaggtttcccggtatttt 324

                                                                       
Query: 125 caaagtcagttggatgtagaagttaaaataaatctagttggtcctctaaaggagagagag 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaagccagttggatgtagaagttaaaataaatctagttggtcctctaaaggagagagag 384

                                                                       
Query: 185 a--tctgctagtaatctctctctctctctccctctctttctctctttctctttctctccc 242
           |  ||||||||||||||||||||||||          ||||||||||||||      |||
Sbjct: 385 agatctgctagtaatctctctctctct----------ttctctctttctct------ccc 428

                                                                       
Query: 243 tctctctctttctctctctccctctctctctccctcctctctctctccctcctctctctt 302
           |||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 429 tctctctcttcctctctctccctctctc----cctcctctctctctccctcctctctctt 484

                       
Query: 303 cctctctctctc 314
           ||||||||||||
Sbjct: 485 cctctctctctc 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 719
Length adjustment: 9
Effective length of query: 308
Effective length of database: 710
Effective search space:   218680
Effective search space used:   218680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)