BAC Information

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BAC

Clone NameMSMg01-291L13
Chromosome5 (Build37)
Map Location 77,736,076 - 77,896,259
singlet/doubletdoublet
Overlap gene2610024G14Rik, Polr2b, Igfbp7
Upstream genePdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest
Downstream genePea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291L13.T7 (MSMg01no291_l13.b1)MSMg01-291L13.TJ (MSMg01no291_l13.g1)
ACCAG420640AG420641
length726735
length of high quality
(start - end)
371 (36 - 406)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no291_l13.b1 PHD_FILE: MSMg01no291_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:35 2005CHROMAT_FILE: MSMg01no291_l13.g1 PHD_FILE: MSMg01no291_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,736,076 - 77,736,441)(77,896,026 - 77,896,259)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAT
GTACCCGAGGCTGGCCTTGACATCATTGAGGTCTGCTTGCCTCTGCCTCC
CAAGTGCTGGGACTAAAGGTGTACACCACACCACTAGGCTGGGCTCTGAA
GACATCTTTTATGTTTGCCTTAAATAAGTCACTCAAACTAACTATGTGTA
TGACTATGAGACTGTGGCTATGACAAAACTTTTGTCTTCTTTTTAGAAGA
TAATGTGGGTCATTCTCTCCGGTCGGTCTTGTTTCAGGCTGTGTATATTT
TCTGTCAGGTGGTAAAAAAATCCCTTTTTCTTTTTCATTAATGAAATCAC
AGGAAAGATAACAAAGAGATGGAGAACTTCGTCAAAGACCTTTACTGCCG
TTGCCCACCCCCGCGTTTCCAAACAATAGTAACCTTTCCTACAAAAAGCC
TACATTCCAGAATAGGGAAGGAAGCCTCTTCCTGGGAAAATGGCTATGTA
GAGGAAGGATGCATACCTACTATGTAGAGGAAGGATGCGTACCTACTATG
TAGCCGTGCTTTTTCAGTTGATTGAGCTGACTTTGTTCTTCTTCACTAAG
ATCTTCCTCAGCTTTGGTCGCATCTTCTTGAAGCCTTCTTTGTCTTTTGA
ACATTCTGTAAGGAGTCGGGTTGCAAATAGGAAACTTCAGGAGGTTTAAT
GTGGTGCCTGAAATACCATAAGAGTN
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGGAAGGTGAATATGTTCAAC
ATACAATGTGTACCTCTATCACCCTTTAAACATAAAATAGGTATGTTTTT
AATATCTATGGACCGAAAAGATATCCAGCGTTCTCCTGTTGTCCTGTTTC
TTCTCCCACATAAATATTGACTCCTAAATTGCTAAATGCAGGCTTGGCTG
CTACCACTTCATTTGTTTCCCTTCCTACCCAGTGACACTTCAGATCCCGC
ACAAGCAGGATTTGCGATATATTCATAAACAGAACTGGGAGACGGTTCAA
AGCTGCAGGATTTTTTTGTTCATTACCACCACGCCTGTATCCTTCTAAGC
TGGCTCTGAGGTCAGTGCCCACCCACAAAGATGAAATGAGACGTTGGCAT
ATTTGGGGAAGGGCAGAGAAGTTGGTGCTGTGATAACAGACTTGAGCTGC
AAAGGGCAGCCTTTAAGGAAGGAATGGAAAAACTATAATCTACAGCCTAG
GAACACTTATTAAGATGAGATTTAACCTAAGACCATAAAATCTTAAACGG
TAGATAATAAGGTCAAGCCAAGTTACTATTTTCAGCTCTGAACAGATGAC
GAGACAGGAGGGCATAAATGAGAATTAAAAGAAGAGAGATTCAGAATAGA
TCATAAGGTTACCACAAATAATCAATGGCTGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_l13.b1 MSMg01no291_l13.b1 CHROMAT_FILE:
MSMg01no291_l13.b1 PHD_FILE: MSMg01no291_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:35 2005
         (371 letters)



>mm_chr5_77735873_77736643
          Length = 771

 Score =  669 bits (346), Expect = 0.0
 Identities = 361/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctatgtacccgaggctggccttgacatcattgaggtctgcttgcctctgcct 63
           |||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattctctatgtagaagaggctggccttgacatcattgaggtctgcttgcctttgcct 263

                                                                       
Query: 64  cccaagtgctgggactaaaggtgtacaccacaccactaggctgggctctgaagacatctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccaagtgctgggactaaaggtgtacaccacaccactaggctgggctctgaagacatctt 323

                                                                       
Query: 124 ttatgtttgccttaaataagtcactcaaactaactatgtgtatgactatgagactgtggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatgtttgccttaaataagtcactcaaactaactatgtgtatgactatgagactgtggc 383

                                                                       
Query: 184 tatgacaaaacttttgtcttctttttagaagataatgtgggtcattctctccggtcggtc 243
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgacaatacttttgtcttctttttagaagataatgtgggtcattctctccggtcggtc 443

                                                                       
Query: 244 ttgtttcaggctgtgtatattttctgtcaggtggtaaaaaaatccctttttctttttcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtttcaggctgtgtatattttctgtcaggtggtaaaaaaatccctttttctttttcat 503

                                                                       
Query: 304 taatgaaatcacaggaaagataacaaagagatggagaacttcgtcaaagacctttactgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatgaaatcacaggaaagataacaaagagatggagaacttcgtcaaagacctttactgc 563

                 
Query: 364 cgttgc 369
           ||||||
Sbjct: 564 cgttgc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no291_l13.g1 MSMg01no291_l13.g1 CHROMAT_FILE:
MSMg01no291_l13.g1 PHD_FILE: MSMg01no291_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:35 2005
         (234 letters)



>mm_chr5_77895826_77896459
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaacataaaataggtatgtttttaatatctatggaccgaaaagatatccagcgttctc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttaaacataaaataagtatgtttttaatatctatggaccgaaaagatatccagcgttctc 375

                                                                       
Query: 61  ctgttgtcctgtttcttctcccacataaatattgactcctaaattgctaaatgcaggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctgttgtcctgtttcttctcccacataaatattgactcctaaattgctaaatgcaggctt 315

                                                                       
Query: 121 ggctgctaccacttcatttgtttcccttcctacccagtgacacttcagatcccgcacaag 180
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 314 ggctgctaccacttcatttgtttcccttcccacccagtgacacttcagatcctgcacaag 255

                                                                 
Query: 181 caggatttgcgatatattcataaacagaactgggagacggttcaaagctgcagg 234
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 254 caggatttgcgatatattcacaaacagaactgggagacggttcaaagctgcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)