Query= MSMg01no292_f10.b1 MSMg01no292_f10.b1 CHROMAT_FILE:
MSMg01no292_f10.b1 PHD_FILE: MSMg01no292_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:22 2005
(618 letters)
>mm_chr5_99468519_99469530
Length = 1012
Score = 1069 bits (553), Expect = 0.0
Identities = 596/619 (96%), Gaps = 16/619 (2%)
Strand = Plus / Plus
Query: 5 gaattcacaaagctaacaagcttgagagttctcctatctcttagggggtggggcatagga 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcacaaagctaacaagcttgagagttctcccatctcttagggggtggggcatagga 264
Query: 65 ggatcacacattgccttttctctgcctttaacggaggaatgcagcccacctctgagctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatcacacattgccttttctctgcctttaacggaggaatgcagcccacctctgagctcc 324
Query: 125 ttctgagatatgtctttagtccttgaacacaaaaactaggcgctattacataagcctcct 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ttctgagatatgtctttagtccttgaacacaaaaactaggcgctattacataagtctcct 384
Query: 185 cttggatgtgtctctgctacacttggtgccccctgcctcttttaaaccttatcgccagag 244
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 cttggatgtgtctctgctacacttggtgccccctgcctcttttaaa------cgccagag 438
Query: 245 agtgcgtgttctcaggatgcccaaactcaggagtagcctacagtgatgggaggaacaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agtgcgtgttctcaggatgcccaaactcaggagtagcctacagtgatgggaggaacaaaa 498
Query: 305 gacctaccttctcatcattatacacacagccttagaagtcccagagcagctgccatgcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gacctaccttctcatcattatacacacagccttagaagtcccagagcagctgccatgcct 558
Query: 365 tacccccc-----tctctcaggcctccaactttttctctctacagagaatggaggaggcc 419
|| | |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 559 ta-----caaaagtctctcaggcctcctactttttctctctacagagaacggaggaggcc 613
Query: 420 gagctgggagcgggttctaaggggtggagcatgtccagactcctgtgcatctagactcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gagctgggagcgggttctaaggggtggagcatgtccagactcctgtgcatctagactcct 673
Query: 480 aagttcctgtgcaatctcttccaactagagttctctcttcccaggacaaatttccacaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aagttcctgtgcaatctcttccaactagagttctctcttcccaggacaaatttccacaga 733
Query: 540 ggaacctctggagatccatcacacacagacttgttacattccttctcctccttaaaagca 599
|||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct: 734 ggaacctctggagatccatcacacacagacttgttacactccttcccctcctcaaaagca 793
Query: 600 atcagatgagctctgtgtt 618
|||||||||||||||||||
Sbjct: 794 atcagatgagctctgtgtt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1012
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1002
Effective search space: 609216
Effective search space used: 609216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no292_f10.g1 MSMg01no292_f10.g1 CHROMAT_FILE:
MSMg01no292_f10.g1 PHD_FILE: MSMg01no292_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:23 2005
(273 letters)
>mm_chr5_99617487_99618159
Length = 673
Score = 474 bits (245), Expect = e-138
Identities = 266/273 (97%)
Strand = Plus / Minus
Query: 1 cacacagcactgggcttctctgtggtgggctggtgcgggacttcaacttgaaggcatgga 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 473 cacacagcactgggcttctctgtggtgggctggtgcaggacttcaacttgaaggcatgga 414
Query: 61 tttgtgaacctagtttcttctccacctcaaagtgagagttgcctccctcctcactgaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tttgtgaacctagtttcttctccacctcaaagtgagagttgcctccctcctcactgaagt 354
Query: 121 tcttggggtctggaaggattaacacagataacttttactgtgttgccttttcaaattgcc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttttggggtctggaaggattaacacagataacttttactgtgttgccttttcaaattgcc 294
Query: 181 atcccttatcagcttactagaccaggttctggagccccagacatggcttcctccgcttca 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 293 atcccttatcagcttactagaccaggctctggagccccagacatggcttcctccgcttca 234
Query: 241 tgtatatgtatccactcctgaataactgttgca 273
|| | |||| |||||| ||||||||||||||||
Sbjct: 233 tggagatgtttccacttctgaataactgttgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
