BAC Information

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BAC

Clone NameMSMg01-292G01
Chromosome5 (Build37)
Map Location 70,068,745 - 70,151,802
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292G01.T7 (MSMg01no292_g01.b1)MSMg01-292G01.TJ (MSMg01no292_g01.g1)
ACCAG421116AG421117
length751753
length of high quality
(start - end)		537 (46 - 582)344 (78 - 421)
definitionCHROMAT_FILE: MSMg01no292_g01.b1 PHD_FILE: MSMg01no292_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:25 2005CHROMAT_FILE: MSMg01no292_g01.g1 PHD_FILE: MSMg01no292_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,151,303 - 70,151,802)(70,068,745 - 70,069,088)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCCATACCACTTTCTGAAAATATCAATATCAAGAAATAGCAGC
AAAATGAGAATGACATATCACCCAATATATTTATGGTAGCATTCTGTTTA
AAATTAAGTTTAAACATTTATTTTCGTCTTGAGAACTGTGACAGCTAAAT
AATGACTTTTCCATTCATCACTTTAATATCCCTCCCTTCCTATACCAAGC
CTTGAATTCTCACCACAATCTTAGTAACAACACAGAGGTAAGGATTGCAG
TACCAAAAAGGAGGAGCTGAGTTTACTTTCAACATGCATTTTTTGTGAAC
AGGTCACTTAATTTGTGCTTCCTTTAATCATTTTGAAGTGGGAATGATAG
TCATATCCATCTCATACCCAAAGTGTGAGAGAGTGATATGTTATATCATG
TAAAATACTTCAAAAGGATATACAATCAACAATATCTAAAAAATATTAGA
CATAGTGCTAATGTCAGTATCATCACACTGTCTTCATCAACAAATGACTA
AGATTCACACACACACACACACACACACACACTCTCATTAGTAAAGTAAA
GGCAGAAGGAAGGGTAGCTGTTTTTTTAATTCTACCCACTAAATTACATC
TATGAAAGTGCATAGTTACAGTGTCGTGGTCCATTGCTTTATTAGCATAT
TCACACTACAGTGGGATAGTCTGCTTACCAACTTGAACCACCCTAATTAG
C

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGGGACCTTGTCTCAAATGAA
AGAAACAGATCAGAAAATGAACAACAAGAAAGTGACTTATTGTTTCTAAA
CCTGGGCATTTGCTAAAAATTTAAATCTTTAAACAATCATATGTGAAGTA
ATATAATAGTTCAGGTCAACAAAAAGTATCAATATAATAACTTATTACAG
TAAGAAGGAGTCATTATGTCTTTTAACTAGTATCCTCACTTTTGTTAATG
TGCACAGAATATGTTGGTATAATGTCTAGAAATAGATTTTTAGTATGTCA
GCAAGGTTATAAACCAATGGTGATTTGAATCTTCTTTTGGATATTGTGTT
TTGAAAGTGTGTTCTATGGAGTATGTTGATTCACATCATCTTATTCATGC
ATCCAGTAGATTCTGCAGCTCTCTAGTATTGACTGCCACTTACAACTGTC
CTATATCTCCTGCTTGTTCTCTCCAGGAAGCAGTCGTGTCTTTTACATTT
TTTTTAATTTTATTTTTATTAGGTATTTTCCTCGCTTACATTGTCAATGC
TTTCCCATAAGTCCGTCATAACCATCCCTCTTCTACATTTTTAATACGTT
CATTTGTTGTGTGTCTGCTTCGGCCAACGGACCGCCCTTCCGTTTATGTA
TATACCATACACCCCGTCTCCCCCATCTTTTTAGAACTTTTTCTCTTTGT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_g01.b1 MSMg01no292_g01.b1 CHROMAT_FILE:
MSMg01no292_g01.b1 PHD_FILE: MSMg01no292_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:25 2005
         (537 letters)



>mm_chr5_70151303_70152239
          Length = 937

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacccataccactttctgaaaatatcaatatcaagaaatagcagcaaaatgaga 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattccacccataaaactttctgaaaatatcaatatcaagaaatagcagcaaaatgaga 441

                                                                       
Query: 65  atgacatatcacccaatatatttatggtagcattctgtttaaaattaagtttaaacattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgacatatcacccaatatatttatggtagcattctgtttaaaattaagtttaaacattt 381

                                                                       
Query: 125 attttcgtcttgagaactgtgacagctaaataatgacttttccattcatcactttaatat 184
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 atttttgtcttgagaactgtgacagctaaataatgacttttctattcatcactttaatat 321

                                                                       
Query: 185 ccctcccttcctataccaagccttgaattctcaccacaatcttagtaacaacacagaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccctcccttcctataccaagccttgaattctcaccacaatcttagtaacaacacagaggt 261

                                                                       
Query: 245 aaggattgcagtaccaaaaaggaggagctgagtttactttcaacatgcattttttgtgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggattgcagtaccaaaaaggaggagctgagtttactttcaacatgcattttttgtgaa 201

                                                                       
Query: 305 caggtcacttaatttgtgcttcctttaatcattttgaagtgggaatgatagtcatatcca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 caggtcacttaatttgtgcttcctttaatcattttgaagtgggaatgatagtcatatcca 141

                                                                       
Query: 365 tctcatacccaaagtgtgagagagtgatatgttatatcatgtaaaatacttcaaaaggat 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tctcatagccaaagtgtgagagagtgatatgttatatcatgtaaaatacttcaaaaggat 81

                                                                       
Query: 425 atacaatcaacaatatctaaaaaatattagacatagtgctaatgtcagtatcatcacact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  atacaatcaacaatatctaaaaaatattagacatagtgctaatgtcagtatcatcacact 21

                               
Query: 485 gtcttcatcaacaaatgact 504
           ||||||||||||||||||||
Sbjct: 20  gtcttcatcaacaaatgact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no292_g01.g1 MSMg01no292_g01.g1 CHROMAT_FILE:
MSMg01no292_g01.g1 PHD_FILE: MSMg01no292_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:25 2005
         (344 letters)



>mm_chr5_70068545_70069288
          Length = 744

 Score =  658 bits (340), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgggaccttgtctcaaatgaaagaaacagatcagaaaatgaacaacaagaaagtgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aatgggaccttgtctcaaatgaaagaaacagatcagaaaatgaacaaaaagaaagtgact 260

                                                                       
Query: 61  tattgtttctaaacctgggcatttgctaaaaatttaaatctttaaacaatcatatgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgtttctaaacctgggcatttgctaaaaatttaaatctttaaacaatcatatgtgaa 320

                                                                       
Query: 121 gtaatataatagttcaggtcaacaaaaagtatcaatataataacttattacagtaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatataatagttcaggtcaacaaaaagtatcaatataataacttattacagtaagaag 380

                                                                       
Query: 181 gagtcattatgtcttttaactagtatcctcacttttgttaatgtgcacagaatatgttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcattatgtcttttaactagtatcctcacttttgttaatgtgcacagaatatgttgg 440

                                                                       
Query: 241 tataatgtctagaaatagatttttagtatgtcagcaaggttataaaccaatggtgatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataatgtctagaaatagatttttagtatgtcagcaaggttataaaccaatggtgatttg 500

                                                       
Query: 301 aatcttcttttggatattgtgttttgaaagtgtgttctatggag 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcttcttttggatattgtgttttgaaagtgtgttctatggag 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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